@article{bib1, journal = {Annual Review of Ecology and Systematics}, title = {The evolution of social behavior}, volume = {5}, author = {Alexander, RD}, pages = {325--383}, date = {1974}, year = {1974}, } @article{bib2, journal = {Molecular Ecology}, title = {Highly similar microbial communities are shared among related and trophically similar ant species}, volume = {21}, author = {Anderson, KE and Russell, JA and Moreau, CS and Kautz, S and Sullam, KE and Hu, Y and Basinger, U and Mott, BM and Buck, N and Wheeler, DE}, pages = {2282--2296}, date = {2012}, year = {2012}, } @article{bib3, journal = {Ecology Letters}, title = {Economic game theory for mutualism and cooperation}, volume = {14}, author = {Archetti, M and Scheuring, I and Hoffman, M and Frederickson, ME and Pierce, NE and Yu, DW}, pages = {1300--1312}, date = {2011}, year = {2011}, } @article{bib4, journal = {The American Naturalist}, title = {Let the right one in: a microeconomic approach to partner choice in mutualisms}, volume = {177}, author = {Archetti, M and Ubeda, F and Fudenberg, D and Green, J and Pierce, NE and Yu, DW}, pages = {75--85}, date = {2011}, year = {2011}, } @article{bib5, journal = {Zoological Journal of the Linnean Society}, title = {Grooming behaviours in the hymenoptera (Insecta): potential phylogenetic significance}, volume = {125}, author = {Basibuyuk, HH and Quicke, DLJ}, pages = {349--382}, date = {1999}, year = {1999}, } @article{bib6, journal = {Journal of Statistical Software}, title = {Fitting linear mixed-effects models using lme4}, volume = {67}, author = {Bates, D and Maechler, M and Bolker, B and Walker, S}, pages = {1--48}, date = {2015}, year = {2015}, } @article{bib7, journal = {PLOS ONE}, title = {The evolution of stomach acidity and its relevance to the human microbiome}, volume = {10}, author = {Beasley, DE and Koltz, AM and Lambert, JE and Fierer, N and Dunn, RR}, date = {2015}, year = {2015}, } @article{bib8, journal = {The Florida Entomologist}, title = {Artificial diet for rearing various species of ants}, volume = {53}, author = {Bhatkar, A and Whitcomb, WH}, pages = {229--232}, date = {1970}, year = {1970}, } @article{bib9, journal = {Journal of Chemical Ecology}, title = {New synthesis: the chemistry of partner choice in insect-microbe mutualisms}, volume = {40}, author = {Biedermann, PH and Kaltenpoth, M}, date = {2014}, year = {2014}, } @article{bib10, journal = {eLife}, title = {The unexhausted potential of E. coli}, volume = {4}, author = {Blount, ZD}, date = {2015}, year = {2015}, } @article{bib11, journal = {Annual Review of Entomology}, title = {Semiochemical parsimony in the arthropoda}, volume = {41}, author = {Blum, MS}, pages = {353--374}, date = {1996}, year = {1996}, } @article{bib12, journal = {mBio}, title = {Frequent replenishment sustains the beneficial microbiome of Drosophila melanogaster}, volume = {4}, author = {Blum, JE and Fischer, CN and Miles, J and Handelsman, J}, date = {2013}, year = {2013}, } @article{bib13, journal = {Insect Evolutionary Ecology}, publisher = {CABI}, title = {Life histories and parasite pressure across the major groups of social insects}, author = {Boomsma, JJ and Schmid-Hempel, P and Hughes, WOH and Fellowes, M. H. G and Rolff, J}, pages = {1345--1346}, date = {2005}, year = {2005}, } @article{bib14, publisher = {CRC Press}, title = {Multiple Comparisons Using R}, author = {Bretz, F and Hothorn, T and Westfall, P}, date = {2011}, year = {2011}, } @article{bib15, journal = {Trends in Microbiology}, title = {Host, symbionts, and the microbiome: the missing tripartite interaction}, volume = {27}, author = {Brinker, P and Fontaine, MC and Beukeboom, LW and Falcao Salles, J}, pages = {480--488}, date = {2019}, year = {2019}, } @article{bib16, journal = {Gut Microbes}, title = {Gut-associated microbes of Drosophila melanogaster}, volume = {3}, author = {Broderick, NA and Lemaitre, B}, pages = {307--321}, date = {2012}, year = {2012}, } @article{bib17, journal = {The R Journal}, title = {glmmTMB balances speed and flexibility among packages for Zero-inflated generalized linear mixed modeling}, volume = {9}, author = {Brooks, ME and Kristensen, K and Benthem, KJ and Magnusson, A and Berg, CW and Nielsen, A and Skaug, HJ and Mächler, M and Bolker, BM}, date = {2017}, year = {2017}, } @article{bib18, journal = {BMC Microbiology}, title = {Deep divergence and rapid evolutionary rates in gut-associated Acetobacteraceae of ants}, volume = {16}, author = {Brown, BP and Wernegreen, JJ}, date = {2016}, year = {2016}, } @article{bib19, journal = {BMC Genomics}, title = {Genomic erosion and extensive horizontal gene transfer in gut-associated Acetobacteraceae}, volume = {20}, author = {Brown, BP and Wernegreen, JJ}, date = {2019}, year = {2019}, } @article{bib20, journal = {Annual Review of Microbiology}, title = {The gut Microbiota of termites: digesting the diversity in the light of ecology and evolution}, volume = {69}, author = {Brune, A and Dietrich, C}, pages = {145--166}, date = {2015}, year = {2015}, } @article{bib21, journal = {Ecology and Evolution}, title = {Wood ants produce a potent antimicrobial agent by applying formic acid on tree-collected resin}, volume = {7}, author = {Brütsch, T and Jaffuel, G and Vallat, A and Turlings, TC and Chapuisat, M}, pages = {2249--2254}, date = {2017}, year = {2017}, } @article{bib22, journal = {PLOS ONE}, title = {Feeding and stocking up: radio-labelled food reveals exchange patterns in ants}, volume = {4}, author = {Buffin, A and Denis, D and Van Simaeys, G and Goldman, S and Deneubourg, JL}, date = {2009}, year = {2009}, } @article{bib23, journal = {Insectes Sociaux}, title = {Trophallaxis in Lasius Niger: a variable frequency and constant duration for three food types}, volume = {58}, author = {Buffin, A and Mailleux, A-C and Detrain, C and Deneubourg, JL}, pages = {177--183}, date = {2011}, year = {2011}, } @article{bib24, journal = {Ecology}, title = {Chemically mediated competition between microbes and animals: microbes as consumers in food webs}, volume = {87}, author = {Burkepile, DE and Parker, JD and Woodson, CB and Mills, HJ and Kubanek, J and Sobecky, PA and Hay, ME}, pages = {2821--2831}, date = {2006}, year = {2006}, } @article{bib25, publisher = {Doctor Thesis of Philosophy in Entomology}, address = {Virginia, USA}, title = {Nutritional ecology of the carpenter ant Camponotus pennsylvanicus (De Geer): macronutrient preference and particle consumption}, author = {Cannon, CA}, date = {1998}, year = {1998}, } @article{bib26, journal = {Ecological Entomology}, title = {Bacteria in oral secretions of an endophytic insect inhibit antagonistic fungi}, volume = {31}, author = {Cardoza, YJ and Klepzig, KD and Raffa, KF}, pages = {636--645}, date = {2006}, year = {2006}, } @article{bib27, journal = {Trends in Ecology & Evolution}, title = {Complex cocktails: the evolutionary novelty of venoms}, volume = {28}, author = {Casewell, NR and Wüster, W and Vonk, FJ and Harrison, RA and Fry, BG}, pages = {219--229}, date = {2013}, year = {2013}, } @article{bib28, publisher = {Cambridge University Press}, address = {Cambridge, United Kingdom}, title = {The Insects: Structure and Function}, author = {Chapman, RF}, date = {2013}, year = {2013}, } @article{bib29, journal = {Advances in Microbial Physiology}, title = {Organic acids: chemistry, antibacterial activity and practical applications}, volume = {32}, author = {Cherrington, CA and Hinton, M and Mead, GC and Chopra, I}, pages = {87--108}, date = {1991}, year = {1991}, } @article{bib30, journal = {Nature Immunology}, title = {Innate immune recognition of the Microbiota promotes host-microbial symbiosis}, volume = {14}, author = {Chu, H and Mazmanian, SK}, pages = {668--675}, date = {2013}, year = {2013}, } @article{bib31, journal = {Scientific Reports}, title = {Microbial community composition reveals spatial variation and distinctive core microbiome of the weaver ant Oecophylla smaragdina in Malaysia}, volume = {8}, author = {Chua, K-O and Song, S-L and Yong, H-S and See-Too, W-S and Yin, W-F and Chan, K-G}, date = {2018}, year = {2018}, } @article{bib32, journal = {bioRxiv}, title = {Oecophyllibacter saccharovorans gen. nov. sp. nov. a bacterial symbiont of the weaver ant Oecophylla smaragdina with a plasmid-borne sole rrn operon}, author = {Chua, K-O and See-too, W-S and Tan, J-Y and Song, S-L and Yong, H-S and Yin, W-F and Chan, K-G}, date = {2020}, year = {2020}, } @article{bib33, journal = {Bulletin of Entomological Research}, title = {Indirect evidence of pathogen-associated altered oocyte production in queens of the invasive yellow crazy ant, Anoplolepis gracilipes, in Arnhem Land, Australia}, volume = {108}, author = {Cooling, MD and Hoffmann, BD and Gruber, MAM and Lester, PJ}, pages = {451--460}, date = {2018}, year = {2018}, } @article{bib34, journal = {Environmental Microbiology}, title = {Asaia, a versatile acetic acid bacterial symbiont, capable of cross-colonizing insects of phylogenetically distant genera and orders}, volume = {11}, author = {Crotti, E and Damiani, C and Pajoro, M and Gonella, E and Rizzi, A and Ricci, I and Negri, I and Scuppa, P and Rossi, P and Ballarini, P and Raddadi, N and Marzorati, M and Sacchi, L and Clementi, E and Genchi, M and Mandrioli, M and Bandi, C and Favia, G and Alma, A and Daffonchio, D}, pages = {3252--3264}, date = {2009}, year = {2009}, } @article{bib35, journal = {Nature}, title = {Fungus-growing ants use antibiotic-producing Bacteria to control garden parasites}, volume = {398}, author = {Currie, CR and Scott, JA and Summerbell, RC and Malloch, D}, pages = {701--704}, date = {1999}, year = {1999}, } @article{bib36, journal = {Nature}, title = {Diet rapidly and reproducibly alters the human gut microbiome}, volume = {505}, author = {David, LA and Maurice, CF and Carmody, RN and Gootenberg, DB and Button, JE and Wolfe, BE and Ling, AV and Devlin, AS and Varma, Y and Fischbach, MA and Biddinger, SB and Dutton, RJ and Turnbaugh, PJ}, pages = {559--563}, date = {2014}, year = {2014}, } @article{bib37, journal = {Systematic Biology}, title = {Host-symbiont stability and fast evolutionary rates in an ant-bacterium association: cospeciation of Camponotus species and their endosymbionts, candidatus blochmannia}, volume = {53}, author = {Degnan, PH and Lazarus, AB and Brock, CD and Wernegreen, JJ}, pages = {95--110}, date = {2004}, year = {2004}, } @article{bib38, journal = {History of Modern Biotechnology I}, publisher = {Springer}, address = {Berlin, Heidelberg}, title = {The Natural Functions of Secondary Metabolites}, author = {Demain, AL and Fang, A and Fiechter, A}, pages = {1--39}, date = {2000}, year = {2000}, } @article{bib39, journal = {Journal of Animal Ecology}, title = {Strategies for managing rival bacterial communities: lessons from burying beetles}, volume = {87}, author = {Duarte, A and Welch, M and Swannack, C and Wagner, J and Kilner, RM}, pages = {414--427}, date = {2018}, year = {2018}, } @article{bib40, journal = {Psyche: A Journal of Entomology}, title = {The infrabuccal pocket of a formicine ant: a social filtration device}, volume = {69}, author = {Eisner, T and Happ, GM}, pages = {107--116}, date = {1962}, year = {1962}, } @article{bib41, journal = {Psyche: A Journal of Entomology}, title = {The morphology of the proventriculus of a formicine ant}, volume = {59}, author = {Eisner, T and Wilson, EO}, pages = {47--60}, date = {1952}, year = {1952}, } @article{bib42, journal = {FEMS Microbiology Reviews}, title = {The gut Microbiota of insects - diversity in structure and function}, volume = {37}, author = {Engel, P and Moran, NA}, pages = {699--735}, date = {2013}, year = {2013}, } @article{bib43, journal = {Animal Behaviour}, title = {The evolutionary implications of qualitative variation in the grooming behaviour of the hymenoptera (Insecta)}, volume = {20}, author = {Farish, DJ}, pages = {662--676}, date = {1972}, year = {1972}, } @article{bib44, journal = {PNAS}, title = {Bacteria of the genus Asaia stably associate with anopheles stephensi, an Asian malarial mosquito vector}, volume = {104}, author = {Favia, G and Ricci, I and Damiani, C and Raddadi, N and Crotti, E and Marzorati, M and Rizzi, A and Urso, R and Brusetti, L and Borin, S and Mora, D and Scuppa, P and Pasqualini, L and Clementi, E and Genchi, M and Corona, S and Negri, I and Grandi, G and Alma, A and Kramer, L and Esposito, F and Bandi, C and Sacchi, L and Daffonchio, D}, pages = {9047--9051}, date = {2007}, year = {2007}, } @article{bib45, journal = {BMC Biology}, title = {Nutritional upgrading for omnivorous carpenter ants by the endosymbiont Blochmannia}, volume = {5}, author = {Feldhaar, H and Straka, J and Krischke, M and Berthold, K and Stoll, S and Mueller, MJ and Gross, R}, date = {2007}, year = {2007}, } @article{bib46, journal = {Cell}, title = {Signaling in Host-Associated microbial communities}, volume = {164}, author = {Fischbach, MA and Segre, JA}, pages = {1288--1300}, date = {2016}, year = {2016}, } @article{bib47, journal = {Microbiology}, title = {Insect pathogenic properties of Serratia marcescens: phage-resistant mutants with a decreased resistance to Cecropia immunity and a decreased virulence to Drosophila}, volume = {120}, author = {Flyg, C and Kenne, K and Boman, HG}, pages = {173--181}, date = {1980}, year = {1980}, } @article{bib48, journal = {Science}, title = {Bacterial antagonism in host-associated microbial communities}, volume = {361}, author = {García-Bayona, L and Comstock, LE}, date = {2018}, year = {2018}, } @article{bib49, journal = {PNAS}, title = {Automated monitoring of behavior reveals bursty interaction patterns and rapid spreading dynamics in honeybee social networks}, volume = {115}, author = {Gernat, T and Rao, VD and Middendorf, M and Dankowicz, H and Goldenfeld, N and Robinson, GE}, pages = {1433--1438}, date = {2018}, year = {2018}, } @article{bib50, journal = {Gut}, title = {Gastric acid barrier to ingested microorganisms in man: studies in vivo and in vitro}, volume = {13}, author = {Giannella, RA and Broitman, SA and Zamcheck, N}, pages = {251--256}, date = {1972}, year = {1972}, } @article{bib51, journal = {Insectes Sociaux}, title = {Filtration of microparticles from liquids ingested by the red imported fire antSolenopsis invicta buren}, volume = {28}, author = {Glancey, BM and Vander Meer, RK and Glover, A and Lofgren, CS and Vinson, SB}, pages = {395--401}, date = {1981}, year = {1981}, } @article{bib52, journal = {Scientific Reports}, title = {Ant trophallactic networks: simultaneous measurement of interaction patterns and food dissemination}, volume = {5}, author = {Greenwald, E and Segre, E and Feinerman, O}, date = {2015}, year = {2015}, } @article{bib53, journal = {eLife}, title = {Individual crop loads provide local control for collective food intake in ant colonies}, volume = {7}, author = {Greenwald, EE and Baltiansky, L and Feinerman, O}, date = {2018}, year = {2018}, } @article{bib54, journal = {The Prokaryotes}, publisher = {Springer}, address = {New York}, title = {The genus Serratia}, author = {Grimont, F and Grimont, PAD and Dworkin, M and Falkow, S and Rosenberg, E and Schleifer, KH and Stackebrandt, E}, pages = {219--244}, date = {2006}, year = {2006}, } @article{bib55, journal = {Biology Letters}, title = {Trophallaxis and prophylaxis: social immunity in the carpenter ant Camponotus pennsylvanicus}, volume = {7}, author = {Hamilton, C and Lejeune, BT and Rosengaus, RB}, pages = {89--92}, date = {2011}, year = {2011}, } @article{bib56, journal = {PNAS}, title = {Caterpillars lack a resident gut microbiome}, volume = {114}, author = {Hammer, TJ and Janzen, DH and Hallwachs, W and Jaffe, SP and Fierer, N}, pages = {9641--9646}, date = {2017}, year = {2017}, } @article{bib57, journal = {Annual Review of Entomology}, title = {Insect acid-base physiology}, volume = {46}, author = {Harrison, JF}, pages = {221--250}, date = {2001}, year = {2001}, } @article{bib58, title = {DHARMa: Residual diagnostics for hierarchical (multi-level/mixed) regression models}, url = {https://CRAN.R-project.org/package=DHARMa}, author = {Hartig, F}, date = {2019}, year = {2019}, } @article{bib59, journal = {Environmental Entomology}, title = {Bacteria associated with gut lumen of Camponotus japonicus mayr}, volume = {40}, author = {He, H and Chen, Y and Zhang, Y and Wei, C}, pages = {1405--1409}, date = {2011}, year = {2011}, } @article{bib60, journal = {Physiological Reviews}, title = {Gastric acid secretion}, volume = {75}, author = {Hersey, SJ and Sachs, G}, pages = {155--189}, date = {1995}, year = {1995}, } @article{bib61, journal = {Current Protein & Peptide Science}, title = {The family of Serratia type pore forming toxins}, volume = {6}, author = {Hertle, R}, pages = {313--325}, date = {2005}, year = {2005}, } @article{bib62, journal = {PNAS}, title = {Larvae of the parasitoid wasp Ampulex compressa sanitize their host, the american cockroach, with a blend of antimicrobials}, volume = {110}, author = {Herzner, G and Schlecht, A and Dollhofer, V and Parzefall, C and Harrar, K and Kreuzer, A and Pilsl, L and Ruther, J}, pages = {1369--1374}, date = {2013}, year = {2013}, } @article{bib63, journal = {Current Biology}, title = {Fighting fungi with physics: food wrapping by a solitary wasp prevents water condensation}, volume = {17}, author = {Herzner, G and Strohm, E}, date = {2007}, year = {2007}, } @article{bib64, journal = {Science Progress}, title = {Weak organic acids: a panoply of effects on Bacteria}, volume = {86}, author = {Hirshfield, IN and Terzulli, S and O'Byrne, C}, pages = {245--270}, date = {2003}, year = {2003}, } @article{bib65, journal = {Trends in Ecology & Evolution}, title = {Starving the enemy? feeding behavior shapes Host-Parasite interactions}, volume = {35}, author = {Hite, JL and Pfenning, AC and Cressler, CE}, pages = {68--80}, date = {2020}, year = {2020}, } @article{bib66, journal = {Cell and Tissue Research}, title = {Extracellular nutrient digestion and absorption in the insect gut}, volume = {377}, author = {Holtof, M and Lenaerts, C and Cullen, D and Vanden Broeck, J}, pages = {397--414}, date = {2019}, year = {2019}, } @article{bib67, journal = {Physiological Entomology}, title = {The flow of food in colonies of the fire ant, Solenopsis invicta: a multifactorial study}, volume = {6}, author = {Howard, DF and Tschinkel, WR}, pages = {297--306}, date = {1981}, year = {1981}, } @article{bib68, journal = {Gut}, title = {Relationship between gastric secretion and infection}, volume = {28}, author = {Howden, CW and Hunt, RH}, pages = {96--107}, date = {1987}, year = {1987}, } @article{bib69, journal = {Scientific Reports}, title = {Automated tracking and analysis of ant trajectories shows variation in forager exploration}, volume = {9}, author = {Imirzian, N and Zhang, Y and Kurze, C and Loreto, RG and Chen, DZ and Hughes, DP}, date = {2019}, year = {2019}, } @article{bib70, journal = {bioRxiv}, title = {Experimental demonstration that screening can enable the environmental recruitment of a defensive microbiome}, author = {Innocent, T and Holmes, N and Bassam, MA and Scheuring, I and Wilkinson, B and Hutchings, MI and Boomsma, JJ and Yu, DW}, date = {2018}, year = {2018}, } @article{bib71, journal = {PNAS}, title = {Host-symbiont specificity determined by microbe-microbe competition in an insect gut}, volume = {116}, author = {Itoh, H and Jang, S and Takeshita, K and Ohbayashi, T and Ohnishi, N and Meng, XY and Mitani, Y and Kikuchi, Y}, pages = {22673--22682}, date = {2019}, year = {2019}, } @article{bib72, journal = {Molecular Ecology}, title = {Can social partnerships influence the microbiome? insights from ant farmers and their trophobiont mutualists}, volume = {27}, author = {Ivens, ABF and Gadau, A and Kiers, ET and Kronauer, DJC}, pages = {1898--1914}, date = {2018}, year = {2018}, } @article{bib73, journal = {The American Naturalist}, title = {Why fruits rot, seeds mold, and meat spoils}, volume = {111}, author = {Janzen, DH}, pages = {691--713}, date = {1977}, year = {1977}, } @article{bib74, journal = {Journal of Evolutionary Biology}, title = {Experimental evolution of external immune defences in the red flour beetle}, volume = {27}, author = {Joop, G and Roth, O and Schmid-Hempel, P and Kurtz, J}, pages = {1562--1571}, date = {2014}, year = {2014}, } @article{bib75, journal = {Philosophical Transactions of the Royal Society B: Biological Sciences}, title = {Sociality and health: impacts of sociality on disease susceptibility and transmission in animal and human societies}, volume = {370}, author = {Kappeler, PM and Cremer, S and Nunn, CL}, date = {2015}, year = {2015}, } @article{bib76, journal = {Psyche; a Journal of Entomology}, title = {Bacterial infections across the ants: frequency and prevalence of Wolbachia, spiroplasma, and Asaia}, volume = {2013}, author = {Kautz, S and Rubin, BER and Moreau, CS}, date = {2013}, year = {2013}, } @article{bib77, journal = {Applied and Environmental Microbiology}, title = {Surveying the microbiome of ants: comparing 454 pyrosequencing with traditional methods to uncover bacterial diversity}, volume = {79}, author = {Kautz, S and Rubin, BE and Russell, JA and Moreau, CS}, pages = {525--534}, date = {2013}, year = {2013}, } @article{bib78, journal = {Zoologische Beiträge}, title = {Neuere untersuchungen über die sozialen wechselbeziehungen im ameisenvolk, durchgeführt mit Radio-Isotopen}, volume = {5}, author = {Kloft, W}, pages = {519--556}, date = {1960}, year = {1960}, } @article{bib79, journal = {Entomophaga}, title = {Untersuchungen mit radioaktiven isotopen an waldameisen}, volume = {5}, author = {Kloft, W}, pages = {33--41}, date = {1960}, year = {1960}, } @article{bib80, journal = {Scandinavian Journal of Gastroenterology}, title = {Gastric acid in vertebrates}, volume = {27}, author = {Koelz, HR}, pages = {2--6}, date = {1992}, year = {1992}, } @article{bib81, journal = {Journal of Evolutionary Biology}, title = {Survival after pathogen exposure in group-living insects: don't forget the stress of social isolation!}, volume = {29}, author = {Kohlmeier, P and Holländer, K and Meunier, J}, pages = {1867--1872}, date = {2016}, year = {2016}, } @article{bib82, journal = {The Prokaryotes: Alphaproteobacteria and Betaproteobacteria}, publisher = {Springer}, address = {Berlin Heidelberg}, title = {The family Acetobacteraceae}, author = {Komagata, K and Iino, T and Yamada, Y and Rosenberg, E and Delong, E. F and Lory, S and Stackebrandt, E and Thompson, F}, pages = {163--200}, date = {2014}, year = {2014}, } @article{bib83, journal = {Behavioral Ecology and Sociobiology}, title = {Social isolation causes mortality by disrupting energy homeostasis in ants}, volume = {69}, author = {Koto, A and Mersch, D and Hollis, B and Keller, L}, pages = {583--591}, date = {2015}, year = {2015}, } @article{bib84, journal = {Science Advances}, title = {Dynamic microbiome evolution in social bees}, volume = {3}, author = {Kwong, WK and Medina, LA and Koch, H and Sing, KW and Soh, EJY and Ascher, JS and Jaffé, R and Moran, NA}, date = {2017}, year = {2017}, } @article{bib85, journal = {The ISME Journal}, title = {A bacterial filter protects and structures the gut microbiome of an insect}, volume = {10}, author = {Lanan, MC and Rodrigues, PA and Agellon, A and Jansma, P and Wheeler, DE}, pages = {1866--1876}, date = {2016}, year = {2016}, } @article{bib86, journal = {eLife}, title = {Oral transfer of chemical cues, growth proteins and hormones in social insects}, volume = {5}, author = {LeBoeuf, AC and Waridel, P and Brent, CS and Gonçalves, AN and Menin, L and Ortiz, D and Riba-Grognuz, O and Koto, A and Soares, ZG and Privman, E and Miska, EA and Benton, R and Keller, L}, date = {2016}, year = {2016}, } @article{bib87, journal = {Biology Letters}, title = {Defending against parasites: fungus-growing ants combine specialized behaviours and microbial symbionts to protect their fungus gardens}, volume = {2}, author = {Little, AE and Murakami, T and Mueller, UG and Currie, CR}, pages = {12--16}, date = {2006}, year = {2006}, } @article{bib88, journal = {Philosophical Transactions of the Royal Society B-Biological Sciences}, title = {Hexadecanol and hexadecyl formate in the venom gland of formicine ants}, volume = {341}, author = {Lopez, LC and Morgan, ED and Brand, JM}, pages = {177--180}, date = {1993}, year = {1993}, } @article{bib89, journal = {FEMS Microbiology Reviews}, title = {Coping with low pH: molecular strategies in neutralophilic Bacteria}, volume = {38}, author = {Lund, P and Tramonti, A and De Biase, D}, pages = {1091--1125}, date = {2014}, year = {2014}, } @article{bib90, journal = {Indian Journal of Microbiology}, title = {Acetic acid Bacteria: physiology and carbon sources oxidation}, volume = {53}, author = {Mamlouk, D and Gullo, M}, pages = {377--384}, date = {2013}, year = {2013}, } @article{bib91, journal = {Insectes Sociaux}, title = {Food distribution within laboratory colonies of the argentine ant,tridomyrmex humilis (Mayr)}, volume = {17}, author = {Markin, GP}, pages = {127--157}, date = {1970}, year = {1970}, } @article{bib92, journal = {Basic ; Clinical Pharmacology ; Toxicology}, title = {Gastric juice: a barrier against infectious diseases}, volume = {96}, author = {Martinsen, TC and Bergh, K and Waldum, HL}, pages = {94--102}, date = {2005}, year = {2005}, } @article{bib93, journal = {Acid-Base Balance and Nitrogen Excretion in Invertebrates}, publisher = {Springer}, title = {Acid–base regulation in insect haemolymph}, author = {Matthews, PGD and Weihrauch, D and O’Donnell, M}, pages = {219--238}, date = {2017}, year = {2017}, } @article{bib94, journal = {mSystems}, title = {Is host filtering the main driver of phylosymbiosis across the tree of life?}, volume = {3}, author = {Mazel, F and Davis, KM and Loudon, A and Kwong, WK and Groussin, M and Parfrey, LW}, date = {2018}, year = {2018}, } @article{bib95, journal = {PNAS}, title = {Animals in a bacterial world, a new imperative for the life sciences}, volume = {110}, author = {McFall-Ngai, M and Hadfield, MG and Bosch, TC and Carey, HV and Domazet-Lošo, T and Douglas, AE and Dubilier, N and Eberl, G and Fukami, T and Gilbert, SF and Hentschel, U and King, N and Kjelleberg, S and Knoll, AH and Kremer, N and Mazmanian, SK and Metcalf, JL and Nealson, K and Pierce, NE and Rawls, JF and Reid, A and Ruby, EG and Rumpho, M and Sanders, JG and Tautz, D and Wernegreen, JJ}, pages = {3229--3236}, date = {2013}, year = {2013}, } @article{bib96, journal = {Genetics}, title = {Anatomy and physiology of the digestive tract of Drosophila melanogaster}, volume = {210}, author = {Miguel-Aliaga, I and Jasper, H and Lemaitre, B}, pages = {357--396}, date = {2018}, year = {2018}, } @article{bib97, journal = {Insectes Sociaux}, title = {A double-edged sword? the cost of proctodeal trophallaxis in termites}, volume = {63}, author = {Mirabito, D and Rosengaus, RB}, pages = {135--141}, date = {2016}, year = {2016}, } @article{bib98, journal = {Science}, title = {Cospeciation of gut Microbiota with hominids}, volume = {353}, author = {Moeller, AH and Caro-Quintero, A and Mjungu, D and Georgiev, AV and Lonsdorf, EV and Muller, MN and Pusey, AE and Peeters, M and Hahn, BH and Ochman, H}, pages = {380--382}, date = {2016}, year = {2016}, } @article{bib99, journal = {Annual Review of Ecology, Evolution, and Systematics}, title = {Evolutionary and ecological consequences of gut microbial communities}, volume = {50}, author = {Moran, NA and Ochman, H and Hammer, TJ}, pages = {451--475}, date = {2019}, year = {2019}, } @article{bib100, journal = {Myrmecological News}, title = {Chemical sorcery for sociality: exocrine secretions of ants (Hymenoptera: formicidae)}, volume = {11}, author = {Morgan, DE}, pages = {70--91}, date = {2008}, year = {2008}, } @article{bib101, journal = {Science}, title = {Host monitoring of quorum sensing during Pseudomonas aeruginosa infection}, volume = {366}, author = {Moura-Alves, P and Puyskens, A and Stinn, A and Klemm, M and Guhlich-Bornhof, U and Dorhoi, A and Furkert, J and Kreuchwig, A and Protze, J and Lozza, L and Pei, G and Saikali, P and Perdomo, C and Mollenkopf, HJ and Hurwitz, R and Kirschhoefer, F and Brenner-Weiss, G and Weiner, J and Oschkinat, H and Kolbe, M and Krause, G and Kaufmann, SHE}, date = {2019}, year = {2019}, } @article{bib102, journal = {Annual Review of Ecology, Evolution, and Systematics}, title = {The evolution of agriculture in insects}, volume = {36}, author = {Mueller, UG and Gerardo, NM and Aanen, DK and Six, DL and Schultz, TR}, pages = {563--595}, date = {2005}, year = {2005}, } @article{bib103, journal = {BioEssays}, title = {Rethinking "mutualism" in diverse host-symbiont communities}, volume = {38}, author = {Mushegian, AA and Ebert, D}, pages = {100--108}, date = {2016}, year = {2016}, } @article{bib104, journal = {PLOS Pathogens}, title = {A model of bacterial intestinal infections in Drosophila melanogaster}, volume = {3}, author = {Nehme, NT and Liégeois, S and Kele, B and Giammarinaro, P and Pradel, E and Hoffmann, JA and Ewbank, JJ and Ferrandon, D}, date = {2007}, year = {2007}, } @article{bib105, journal = {Developmental & Comparative Immunology}, title = {Characterization of cathepsin D from Eriocheir sinensis involved in Spiroplasma eriocheiris infection}, volume = {86}, author = {Ning, M and Yuan, M and Liu, M and Gao, Q and Wei, P and Gu, W and Wang, W and Meng, Q}, pages = {1--8}, date = {2018}, year = {2018}, } @article{bib106, journal = {PLOS Biology}, title = {Evolutionary relationships of wild hominids recapitulated by gut microbial communities}, volume = {8}, author = {Ochman, H and Worobey, M and Kuo, CH and Ndjango, JB and Peeters, M and Hahn, BH and Hugenholtz, P}, date = {2010}, year = {2010}, } @article{bib107, journal = {PNAS}, title = {Insect's intestinal organ for symbiont sorting}, volume = {112}, author = {Ohbayashi, T and Takeshita, K and Kitagawa, W and Nikoh, N and Koga, R and Meng, XY and Tago, K and Hori, T and Hayatsu, M and Asano, K and Kamagata, Y and Lee, BL and Fukatsu, T and Kikuchi, Y}, date = {2015}, year = {2015}, } @article{bib108, journal = {Current Opinion in Insect Science}, title = {Transmission of mutualistic Bacteria in social and gregarious insects}, volume = {28}, author = {Onchuru, TO and Javier Martinez, A and Ingham, CS and Kaltenpoth, M}, pages = {50--58}, date = {2018}, year = {2018}, } @article{bib109, journal = {Acid-Base Balance and Nitrogen Excretion in Invertebrates}, publisher = {Springer}, title = {Acid–base loops in insect larvae with extremely alkaline midgut regions}, author = {Onken, H and Moffett, DF and Weihrauch, D and O’Donnell, M}, pages = {239--260}, date = {2017}, year = {2017}, } @article{bib110, journal = {Zeitschrift Für Naturforschung Part B-Chemie Biochemie Biophysik Biologie Und Verwandten Gebiete, B}, title = {Weitere beiträge zur kenntnis der chemischen zusammensetzung des giftes von ameisen aus der gattung Formica}, volume = {16}, author = {Osman, MF and Brander, J}, pages = {749--753}, date = {1961}, year = {1961}, } @article{bib111, journal = {Insectes Sociaux}, title = {Untersuchungen zur insektiziden wirkung der verschiedenen bestandteile des giftes der kleinen Roten WaldameiseFormica polyctena Foerst}, volume = {8}, author = {Osman, MFH and Kloft, W}, pages = {383--395}, date = {1961}, year = {1961}, } @article{bib112, journal = {Trends in Ecology & Evolution}, title = {Unifying external and internal immune defences}, volume = {29}, author = {Otti, O and Tragust, S and Feldhaar, H}, pages = {625--634}, date = {2014}, year = {2014}, } @article{bib113, journal = {Scientific Reports}, title = {Molecular mechanism and functional significance of acid generation in the Drosophila midgut}, volume = {6}, author = {Overend, G and Luo, Y and Henderson, L and Douglas, AE and Davies, SA and Dow, JAT}, date = {2016}, year = {2016}, } @article{bib114, journal = {PLOS Biology}, title = {Drosophila melanogaster establishes a species-specific mutualistic interaction with stable gut-colonizing bacteria}, volume = {16}, author = {Pais, IS and Valente, RS and Sporniak, M and Teixeira, L}, date = {2018}, year = {2018}, } @article{bib115, journal = {FEMS Microbiology Ecology}, title = {Diet shapes the gut Microbiota of the omnivorous cockroach Blattella germanica}, volume = {91}, author = {Perez-Cobas, AE and Maiques, E and Angelova, A and Carrasco, P and Moya, A and Latorre, A}, date = {2015}, year = {2015}, } @article{bib116, journal = {eLife}, title = {Destructive disinfection of infected brood prevents systemic disease spread in ant colonies}, volume = {7}, author = {Pull, CD and Ugelvig, LV and Wiesenhofer, F and Grasse, AV and Tragust, S and Schmitt, T and Brown, MJ and Cremer, S}, date = {2018}, year = {2018}, } @article{bib117, journal = {Insectes Sociaux}, title = {Studies on the role of the infrabuccal pocket of the leaf-cutting antAcromyrmex octospinosus (Reich) (Hym., Formicidae)}, volume = {25}, author = {Quinlan, RJ and Cherrett, JM}, pages = {237--245}, date = {1978}, year = {1978}, } @article{bib118, publisher = {R Foundation for Statistical Computing}, address = {Vienna, Austria}, title = {R: A language and environment for statistical computing}, url = {http://www.r-project.org}, author = {{R Development Core Team}}, date = {2019}, year = {2019}, } @article{bib119, journal = {Cell}, title = {Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis}, volume = {118}, author = {Rakoff-Nahoum, S and Paglino, J and Eslami-Varzaneh, F and Edberg, S and Medzhitov, R}, pages = {229--241}, date = {2004}, year = {2004}, } @article{bib120, journal = {PNAS}, title = {Symbiont selection via alcohol benefits fungus farming by Ambrosia beetles}, volume = {115}, author = {Ranger, CM and Biedermann, PHW and Phuntumart, V and Beligala, GU and Ghosh, S and Palmquist, DE and Mueller, R and Barnett, J and Schultz, PB and Reding, ME and Benz, JP}, pages = {4447--4452}, date = {2018}, year = {2018}, } @article{bib121, journal = {Insect Biochemistry and Molecular Biology}, title = {Immune response of the ant Camponotus floridanus against pathogens and its obligate mutualistic endosymbiont}, volume = {41}, author = {Ratzka, C and Liang, C and Dandekar, T and Gross, R and Feldhaar, H}, pages = {529--536}, date = {2011}, year = {2011}, } @article{bib122, journal = {Nature Ecology & Evolution}, title = {Ecological suicide in microbes}, volume = {2}, author = {Ratzke, C and Denk, J and Gore, J}, pages = {867--872}, date = {2018}, year = {2018}, } @article{bib123, journal = {PLOS Biology}, title = {Modifying and reacting to the environmental pH can drive bacterial interactions}, volume = {16}, author = {Ratzke, C and Gore, J}, date = {2018}, year = {2018}, } @article{bib124, journal = {Myrmecological News}, title = {Hotspots for symbiosis: function, evolution, and specificity of ant-microbe associations from trunk to tips of the ant phylogeny (Hymenoptera: formicidae)}, volume = {24}, author = {Russell, JA and Sanders, JG and Moreau, CS}, pages = {43--69}, date = {2017}, year = {2017}, } @article{bib125, journal = {Proceedings of the Royal Society B: Biological Sciences}, title = {An out-of-body experience: the extracellular dimension for the transmission of mutualistic Bacteria in insects}, volume = {282}, author = {Salem, H and Florez, L and Gerardo, N and Kaltenpoth, M}, date = {2015}, year = {2015}, } @article{bib126, journal = {Molecular Ecology}, title = {The evolution of abdominal microbiomes in fungus-growing ants}, volume = {28}, author = {Sapountzis, P and Nash, DR and Schiøtt, M and Boomsma, JJ}, pages = {879--899}, date = {2019}, year = {2019}, } @article{bib127, journal = {Ecology Letters}, title = {How to assemble a beneficial microbiome in three easy steps}, volume = {15}, author = {Scheuring, I and Yu, DW}, pages = {1300--1307}, date = {2012}, year = {2012}, } @article{bib128, journal = {Venoms of the Hymenoptera: Biochemical, Pharmacological and Behavioral Aspects}, publisher = {Academic Press}, address = {Florida}, title = {Chemistry, pharmacology, and chemical ecology of ant venoms}, author = {Schmidt, JO and Piek, T}, pages = {1--580}, date = {1986}, year = {1986}, } @article{bib129, journal = {Science}, title = {Bacterial protection of beetle-fungus mutualism}, volume = {322}, author = {Scott, JJ and Oh, DC and Yuceer, MC and Klepzig, KD and Clardy, J and Currie, CR}, date = {2008}, year = {2008}, } @article{bib130, journal = {Animal Behaviour}, title = {Emergency networking: famine relief in ant colonies}, volume = {79}, author = {Sendova-Franks, AB and Hayward, RK and Wulf, B and Klimek, T and James, R and Planqué, R and Britton, NF and Franks, NR}, pages = {473--485}, date = {2010}, year = {2010}, } @article{bib131, journal = {PNAS}, title = {Microbiome-assisted carrion preservation aids larval development in a burying beetle}, volume = {115}, author = {Shukla, SP and Plata, C and Reichelt, M and Steiger, S and Heckel, DG and Kaltenpoth, M and Vilcinskas, A and Vogel, H}, pages = {11274--11279}, date = {2018}, year = {2018}, } @article{bib132, journal = {Molecular Ecology}, title = {Burying beetles regulate the microbiome of carcasses and use it to transmit a core Microbiota to their offspring}, volume = {27}, author = {Shukla, SP and Vogel, H and Heckel, DG and Vilcinskas, A and Kaltenpoth, M}, pages = {1980--1991}, date = {2018}, year = {2018}, } @article{bib133, journal = {Science}, title = {Innate and adaptive immunity cooperate flexibly to maintain host-microbiota mutualism}, volume = {325}, author = {Slack, E and Hapfelmeier, S and Stecher, B and Velykoredko, Y and Stoel, M and Lawson, MA and Geuking, MB and Beutler, B and Tedder, TF and Hardt, WD and Bercik, P and Verdu, EF and McCoy, KD and Macpherson, AJ}, pages = {617--620}, date = {2009}, year = {2009}, } @article{bib134, journal = {Science}, title = {Social network plasticity decreases disease transmission in a eusocial insect}, volume = {362}, author = {Stroeymeyt, N and Grasse, AV and Crespi, A and Mersch, DP and Cremer, S and Keller, L}, pages = {941--945}, date = {2018}, year = {2018}, } @article{bib135, journal = {PeerJ}, title = {Stress responses upon starvation and exposure to Bacteria in the ant Formica exsecta}, volume = {7}, author = {Stucki, D and Freitak, D and Bos, N and Sundström, L}, date = {2019}, year = {2019}, } @article{bib136, journal = {Infection and Immunity}, title = {Influence of gastric acid on susceptibility to infection with ingested bacterial pathogens}, volume = {76}, author = {Tennant, SM and Hartland, EL and Phumoonna, T and Lyras, D and Rood, JI and Robins-Browne, RM and Driel, IR}, pages = {639--645}, date = {2008}, year = {2008}, } @article{bib137, journal = {Comparative Biochemistry and Physiology Part B: Comparative Biochemistry}, title = {Insect digestive enzymes: properties, compartmentalization and function}, volume = {109}, author = {Terra, WR and Ferreira, C}, pages = {1--62}, date = {1994}, year = {1994}, } @article{bib138, title = {coxme: Mixed Effects Cox Models}, url = {http://CRAN.R-project.org/package=coxme}, author = {Therneau, T}, date = {2019}, year = {2019}, } @article{bib139, publisher = {CRC Press}, title = {Organic Acids and Food Preservation}, author = {Theron, MM and Rykers Lues, JF}, date = {2010}, year = {2010}, } @article{bib140, journal = {Current Biology}, title = {Ants disinfect fungus-exposed brood by oral uptake and spread of their poison}, volume = {23}, author = {Tragust, S and Mitteregger, B and Barone, V and Konrad, M and Ugelvig, LV and Cremer, S}, pages = {76--82}, date = {2013}, year = {2013}, } @article{bib141, journal = {Myrmecological News}, title = {External immune defence in ant societies (Hymenoptera: formicidae): The role of antimicrobial venom and metapleural gland secretion}, volume = {23}, author = {Tragust, S}, pages = {119--128}, date = {2016}, year = {2016}, } @article{bib142, journal = {Oikos}, title = {Fruit, flies and filamentous fungi - experimental analysis of animal-microbe competition using Drosophila melanogaster and Aspergillus mould as a model system}, volume = {119}, author = {Trienens, M and Keller, NP and Rohlfs, M}, pages = {1765--1775}, date = {2010}, year = {2010}, } @article{bib143, journal = {Journal of Chemical Ecology}, title = {Ant interactions with soil organisms and associated semiochemicals}, volume = {38}, author = {Vander Meer, R}, pages = {728--745}, date = {2012}, year = {2012}, } @article{bib144, publisher = {University of Chicago Press}, address = {Chicago, Illinois}, title = {Food Hoarding in Animals}, author = {Vander Wall, SB}, date = {1990}, year = {1990}, } @article{bib145, journal = {Frontiers in Immunology}, title = {Receptors and signaling pathways for recognition of Bacteria in livestock and crops: prospects for beneficial microbes in healthy growth strategies}, volume = {9}, author = {Villena, J and Kitazawa, H and Van Wees, SCM and Pieterse, CMJ and Takahashi, H}, date = {2018}, year = {2018}, } @article{bib146, journal = {Nature Communications}, title = {The digestive and defensive basis of carcass utilization by the burying beetle and its Microbiota}, volume = {8}, author = {Vogel, H and Shukla, SP and Engl, T and Weiss, B and Fischer, R and Steiger, S and Heckel, DG and Kaltenpoth, M and Vilcinskas, A}, date = {2017}, year = {2017}, } @article{bib147, journal = {Trends in Microbiology}, title = {Microbial control of intestinal homeostasis via enteroendocrine cell innate immune signaling}, volume = {28}, author = {Watnick, PI and Jugder, BE}, pages = {141--149}, date = {2020}, year = {2020}, } @article{bib148, journal = {PeerJ}, title = {Genome evolution in an ancient bacteria-ant symbiosis: parallel gene loss among Blochmannia spanning the origin of the ant tribe Camponotini}, volume = {3}, author = {Williams, LE and Wernegreen, JJ}, date = {2015}, year = {2015}, } @article{bib149, journal = {Microbiology and Molecular Biology Reviews}, title = {The acetate switch}, volume = {69}, author = {Wolfe, AJ}, pages = {12--50}, date = {2005}, year = {2005}, } @article{bib150, journal = {Developmental & Comparative Immunology}, title = {An IMD-like pathway mediates the intestinal immunity to modulate the homeostasis of gut Microbiota in Rhynchophorus ferrugineus Olivier (Coleoptera: Dryophthoridae)}, volume = {97}, author = {Xiao, R and Wang, X and Xie, E and Ji, T and Li, X and Muhammad, A and Yin, X and Hou, Y and Shi, Z}, pages = {20--27}, date = {2019}, year = {2019}, }