<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/1999/REC-html401-19991224/loose.dtd"> <html><head><title>Details for gene set NEFTEL_G2.M_2019[GSEA]</title><link href='xtools.css' rel='stylesheet'><link href='http://www.gsea-msigdb.org/gsea/images/icon_16x16.png' rel='shortcut icon'></head><body><div class='keyValTable'><table cols='2' border='0'><th class='keyValTable'></th><th class='keyValTable'></th><tr><td>Dataset</td><td>NSCs_shNf1_sgFosl1.NSCs_shNf1_sgFosl1.cls<br>#Fosl1_versus_Ctrl.NSCs_shNf1_sgFosl1.cls<br>#Fosl1_versus_Ctrl_repos</td></tr><tr><td>Phenotype</td><td>NSCs_shNf1_sgFosl1.cls#Fosl1_versus_Ctrl_repos</td></tr><tr><td>Upregulated in class</td><td>Fosl1</td></tr><tr><td>GeneSet</td><td>NEFTEL_G2.M_2019</td></tr><tr><td>Enrichment Score (ES)</td><td>0.6791001</td></tr><tr><td>Normalized Enrichment Score (NES)</td><td>1.1680313</td></tr><tr><td>Nominal p-value</td><td>0.3697318</td></tr><tr><td>FDR q-value</td><td>0.7155107</td></tr><tr><td>FWER p-Value</td><td>0.936</td></tr><caption class='table'>Table: GSEA Results Summary</caption></table></div><br><div class='image'><img name='enplot_NEFTEL_G2.M_2019' src='enplot_NEFTEL_G2.M_2019_195.png'><br><br><caption>Fig 1: Enrichment plot: NEFTEL_G2.M_2019    <br> Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List</caption></div><br><div class='richTable'><table cols='7' border='1'><th class='richTable'></th><th class='richTable'>SYMBOL</th><th class='richTable'>TITLE</th><th class='richTable'>RANK IN GENE LIST</th><th class='richTable'>RANK METRIC SCORE</th><th class='richTable'>RUNNING ES</th><th class='richTable'>CORE ENRICHMENT</th><tr><td class='lessen'>1</td><td><a href='https://ensembl.org/Search/Results?q=PSRC1'>PSRC1</a></td><td>PSRC1</td><td>2925</td><td>0.192</td><td>-0.0618</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>2</td><td><a href='https://ensembl.org/Search/Results?q=MXD3'>MXD3</a></td><td>MXD3</td><td>3136</td><td>0.173</td><td>-0.0181</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>3</td><td><a href='https://ensembl.org/Search/Results?q=CDCA3'>CDCA3</a></td><td>CDCA3</td><td>3485</td><td>0.141</td><td>0.0105</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>4</td><td><a href='https://ensembl.org/Search/Results?q=CCNB2'>CCNB2</a></td><td>CCNB2</td><td>3487</td><td>0.141</td><td>0.0534</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>5</td><td><a href='https://ensembl.org/Search/Results?q=CKAP2'>CKAP2</a></td><td>CKAP2</td><td>4076</td><td>0.108</td><td>0.0619</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>6</td><td><a href='https://ensembl.org/Search/Results?q=PLK1'>PLK1</a></td><td>PLK1</td><td>4116</td><td>0.106</td><td>0.0925</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>7</td><td><a href='https://ensembl.org/Search/Results?q=TROAP'>TROAP</a></td><td>TROAP</td><td>4121</td><td>0.106</td><td>0.1244</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>8</td><td><a href='https://ensembl.org/Search/Results?q=CCNA2'>CCNA2</a></td><td>CCNA2</td><td>4340</td><td>0.096</td><td>0.1446</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>9</td><td><a href='https://ensembl.org/Search/Results?q=CKAP2L'>CKAP2L</a></td><td>CKAP2L</td><td>4355</td><td>0.096</td><td>0.1730</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>10</td><td><a href='https://ensembl.org/Search/Results?q=KIF20A'>KIF20A</a></td><td>KIF20A</td><td>4425</td><td>0.092</td><td>0.1980</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>11</td><td><a href='https://ensembl.org/Search/Results?q=BUB1B'>BUB1B</a></td><td>BUB1B</td><td>4448</td><td>0.091</td><td>0.2246</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>12</td><td><a href='https://ensembl.org/Search/Results?q=HMGB3'>HMGB3</a></td><td>HMGB3</td><td>4552</td><td>0.086</td><td>0.2465</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>13</td><td><a href='https://ensembl.org/Search/Results?q=BUB1'>BUB1</a></td><td>BUB1</td><td>4569</td><td>0.085</td><td>0.2717</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>14</td><td><a href='https://ensembl.org/Search/Results?q=KIF11'>KIF11</a></td><td>KIF11</td><td>4575</td><td>0.085</td><td>0.2974</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>15</td><td><a href='https://ensembl.org/Search/Results?q=KIF2C'>KIF2C</a></td><td>KIF2C</td><td>4604</td><td>0.084</td><td>0.3218</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>16</td><td><a href='https://ensembl.org/Search/Results?q=FOXM1'>FOXM1</a></td><td>FOXM1</td><td>4655</td><td>0.083</td><td>0.3447</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>17</td><td><a href='https://ensembl.org/Search/Results?q=TTK'>TTK</a></td><td>TTK</td><td>4694</td><td>0.081</td><td>0.3679</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>18</td><td><a href='https://ensembl.org/Search/Results?q=CDC20'>CDC20</a></td><td>CDC20</td><td>4735</td><td>0.080</td><td>0.3905</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>19</td><td><a href='https://ensembl.org/Search/Results?q=TACC3'>TACC3</a></td><td>TACC3</td><td>4761</td><td>0.080</td><td>0.4136</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>20</td><td><a href='https://ensembl.org/Search/Results?q=NCAPD2'>NCAPD2</a></td><td>NCAPD2</td><td>4781</td><td>0.079</td><td>0.4368</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>21</td><td><a href='https://ensembl.org/Search/Results?q=RACGAP1'>RACGAP1</a></td><td>RACGAP1</td><td>5020</td><td>0.072</td><td>0.4488</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>22</td><td><a href='https://ensembl.org/Search/Results?q=KNSTRN'>KNSTRN</a></td><td>KNSTRN</td><td>5053</td><td>0.071</td><td>0.4690</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>23</td><td><a href='https://ensembl.org/Search/Results?q=ECT2'>ECT2</a></td><td>ECT2</td><td>5071</td><td>0.071</td><td>0.4897</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>24</td><td><a href='https://ensembl.org/Search/Results?q=CCNB1'>CCNB1</a></td><td>CCNB1</td><td>5111</td><td>0.069</td><td>0.5091</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>25</td><td><a href='https://ensembl.org/Search/Results?q=KIFC1'>KIFC1</a></td><td>KIFC1</td><td>5151</td><td>0.068</td><td>0.5283</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>26</td><td><a href='https://ensembl.org/Search/Results?q=SPAG5'>SPAG5</a></td><td>SPAG5</td><td>5159</td><td>0.068</td><td>0.5486</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>27</td><td><a href='https://ensembl.org/Search/Results?q=CENPF'>CENPF</a></td><td>CENPF</td><td>5296</td><td>0.065</td><td>0.5626</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>28</td><td><a href='https://ensembl.org/Search/Results?q=CDCA8'>CDCA8</a></td><td>CDCA8</td><td>5365</td><td>0.063</td><td>0.5789</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>29</td><td><a href='https://ensembl.org/Search/Results?q=TMPO'>TMPO</a></td><td>TMPO</td><td>5453</td><td>0.061</td><td>0.5939</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>30</td><td><a href='https://ensembl.org/Search/Results?q=RANGAP1'>RANGAP1</a></td><td>RANGAP1</td><td>5488</td><td>0.060</td><td>0.6108</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>31</td><td><a href='https://ensembl.org/Search/Results?q=OIP5'>OIP5</a></td><td>OIP5</td><td>5872</td><td>0.053</td><td>0.6111</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>32</td><td><a href='https://ensembl.org/Search/Results?q=SMC4'>SMC4</a></td><td>SMC4</td><td>5904</td><td>0.052</td><td>0.6256</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>33</td><td><a href='https://ensembl.org/Search/Results?q=AURKA'>AURKA</a></td><td>AURKA</td><td>6074</td><td>0.049</td><td>0.6337</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>34</td><td><a href='https://ensembl.org/Search/Results?q=TUBB4B'>TUBB4B</a></td><td>TUBB4B</td><td>6234</td><td>0.047</td><td>0.6413</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>35</td><td><a href='https://ensembl.org/Search/Results?q=REEP4'>REEP4</a></td><td>REEP4</td><td>6561</td><td>0.041</td><td>0.6405</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>36</td><td><a href='https://ensembl.org/Search/Results?q=H2AFZ'>H2AFZ</a></td><td>H2AFZ</td><td>6819</td><td>0.038</td><td>0.6415</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>37</td><td><a href='https://ensembl.org/Search/Results?q=ARHGAP11A'>ARHGAP11A</a></td><td>ARHGAP11A</td><td>6865</td><td>0.037</td><td>0.6509</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>38</td><td><a href='https://ensembl.org/Search/Results?q=CDC25B'>CDC25B</a></td><td>CDC25B</td><td>6869</td><td>0.037</td><td>0.6621</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>39</td><td><a href='https://ensembl.org/Search/Results?q=GPSM2'>GPSM2</a></td><td>GPSM2</td><td>6973</td><td>0.036</td><td>0.6687</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>40</td><td><a href='https://ensembl.org/Search/Results?q=KPNA2'>KPNA2</a></td><td>KPNA2</td><td>7042</td><td>0.035</td><td>0.6765</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>41</td><td><a href='https://ensembl.org/Search/Results?q=MZT1'>MZT1</a></td><td>MZT1</td><td>7224</td><td>0.033</td><td>0.6791</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>42</td><td><a href='https://ensembl.org/Search/Results?q=ANP32E'>ANP32E</a></td><td>ANP32E</td><td>8103</td><td>0.023</td><td>0.6499</td><td>No</td></tr><tr><td class='lessen'>43</td><td><a href='https://ensembl.org/Search/Results?q=ARL6IP1'>ARL6IP1</a></td><td>ARL6IP1</td><td>16079</td><td>-0.011</td><td>0.3258</td><td>No</td></tr><tr><td class='lessen'>44</td><td><a href='https://ensembl.org/Search/Results?q=TUBA1C'>TUBA1C</a></td><td>TUBA1C</td><td>18839</td><td>-0.051</td><td>0.2279</td><td>No</td></tr><caption class='table'>Table: GSEA details <a href='NEFTEL_G2.M_2019.tsv'>[plain text format]</a></caption></table></div><br><div class='image'><img name='NEFTEL_G2.M_2019' src='NEFTEL_G2.M_2019_196.png'><br><br><caption>Fig 2: NEFTEL_G2.M_2019    <br> Blue-Pink O' Gram in the Space of the Analyzed GeneSet</caption></div><br><div class='image'><img name='gset_rnd_es_dist' src='gset_rnd_es_dist_197.png'><br><br><caption>Fig 3: NEFTEL_G2.M_2019: Random ES distribution    <br> Gene set null distribution of ES for <b>NEFTEL_G2.M_2019</b></caption></div><br></body></html>