<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/1999/REC-html401-19991224/loose.dtd"> <html><head><title>Details for gene set NEFTEL_NPC1_2019[GSEA]</title><link href='xtools.css' rel='stylesheet'><link href='http://www.gsea-msigdb.org/gsea/images/icon_16x16.png' rel='shortcut icon'></head><body><div class='keyValTable'><table cols='2' border='0'><th class='keyValTable'></th><th class='keyValTable'></th><tr><td>Dataset</td><td>ranaseq_carol_ns_sel_exprs.ranaseq_carol_ns_sel_phenotype.cls<br>#Fosl1_1_versus_Ctrl</td></tr><tr><td>Phenotype</td><td>ranaseq_carol_ns_sel_phenotype.cls#Fosl1_1_versus_Ctrl</td></tr><tr><td>Upregulated in class</td><td>Fosl1_1</td></tr><tr><td>GeneSet</td><td>NEFTEL_NPC1_2019</td></tr><tr><td>Enrichment Score (ES)</td><td>0.7136113</td></tr><tr><td>Normalized Enrichment Score (NES)</td><td>1.9863435</td></tr><tr><td>Nominal p-value</td><td>0.0</td></tr><tr><td>FDR q-value</td><td>0.0</td></tr><tr><td>FWER p-Value</td><td>0.0</td></tr><caption class='table'>Table: GSEA Results Summary</caption></table></div><br><div class='image'><img name='enplot_NEFTEL_NPC1_2019' src='enplot_NEFTEL_NPC1_2019_297.png'><br><br><caption>Fig 1: Enrichment plot: NEFTEL_NPC1_2019    <br> Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List</caption></div><br><div class='richTable'><table cols='7' border='1'><th class='richTable'></th><th class='richTable'>SYMBOL</th><th class='richTable'>TITLE</th><th class='richTable'>RANK IN GENE LIST</th><th class='richTable'>RANK METRIC SCORE</th><th class='richTable'>RUNNING ES</th><th class='richTable'>CORE ENRICHMENT</th><tr><td class='lessen'>1</td><td><a href='https://ensembl.org/Search/Results?q=FXYD6'>FXYD6</a></td><td>FXYD6</td><td>329</td><td>3.517</td><td>0.0764</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>2</td><td><a href='https://ensembl.org/Search/Results?q=SHD'>SHD</a></td><td>SHD</td><td>517</td><td>2.470</td><td>0.1320</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>3</td><td><a href='https://ensembl.org/Search/Results?q=SCG3'>SCG3</a></td><td>SCG3</td><td>752</td><td>1.812</td><td>0.1685</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>4</td><td><a href='https://ensembl.org/Search/Results?q=ELAVL4'>ELAVL4</a></td><td>ELAVL4</td><td>823</td><td>1.701</td><td>0.2095</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>5</td><td><a href='https://ensembl.org/Search/Results?q=TNR'>TNR</a></td><td>TNR</td><td>837</td><td>1.676</td><td>0.2524</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>6</td><td><a href='https://ensembl.org/Search/Results?q=TAGLN3'>TAGLN3</a></td><td>TAGLN3</td><td>930</td><td>1.562</td><td>0.2887</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>7</td><td><a href='https://ensembl.org/Search/Results?q=GRIK2'>GRIK2</a></td><td>GRIK2</td><td>1106</td><td>1.367</td><td>0.3163</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>8</td><td><a href='https://ensembl.org/Search/Results?q=NXPH1'>NXPH1</a></td><td>NXPH1</td><td>1205</td><td>1.286</td><td>0.3452</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>9</td><td><a href='https://ensembl.org/Search/Results?q=ABAT'>ABAT</a></td><td>ABAT</td><td>1213</td><td>1.274</td><td>0.3780</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>10</td><td><a href='https://ensembl.org/Search/Results?q=LRRN1'>LRRN1</a></td><td>LRRN1</td><td>1373</td><td>1.170</td><td>0.4012</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>11</td><td><a href='https://ensembl.org/Search/Results?q=ELMO1'>ELMO1</a></td><td>ELMO1</td><td>1386</td><td>1.166</td><td>0.4309</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>12</td><td><a href='https://ensembl.org/Search/Results?q=SEZ6L'>SEZ6L</a></td><td>SEZ6L</td><td>1388</td><td>1.163</td><td>0.4610</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>13</td><td><a href='https://ensembl.org/Search/Results?q=MYT1'>MYT1</a></td><td>MYT1</td><td>1426</td><td>1.144</td><td>0.4890</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>14</td><td><a href='https://ensembl.org/Search/Results?q=TUBB3'>TUBB3</a></td><td>TUBB3</td><td>1436</td><td>1.141</td><td>0.5182</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>15</td><td><a href='https://ensembl.org/Search/Results?q=BCAN'>BCAN</a></td><td>BCAN</td><td>1442</td><td>1.138</td><td>0.5475</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>16</td><td><a href='https://ensembl.org/Search/Results?q=DCX'>DCX</a></td><td>DCX</td><td>1578</td><td>1.074</td><td>0.5693</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>17</td><td><a href='https://ensembl.org/Search/Results?q=DLL3'>DLL3</a></td><td>DLL3</td><td>1711</td><td>1.002</td><td>0.5893</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>18</td><td><a href='https://ensembl.org/Search/Results?q=MAP2'>MAP2</a></td><td>MAP2</td><td>1712</td><td>1.001</td><td>0.6153</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>19</td><td><a href='https://ensembl.org/Search/Results?q=BTG2'>BTG2</a></td><td>BTG2</td><td>1929</td><td>0.896</td><td>0.6288</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>20</td><td><a href='https://ensembl.org/Search/Results?q=AMOTL2'>AMOTL2</a></td><td>AMOTL2</td><td>1992</td><td>0.864</td><td>0.6484</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>21</td><td><a href='https://ensembl.org/Search/Results?q=OLIG1'>OLIG1</a></td><td>OLIG1</td><td>2160</td><td>0.796</td><td>0.6615</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>22</td><td><a href='https://ensembl.org/Search/Results?q=DLL1'>DLL1</a></td><td>DLL1</td><td>2175</td><td>0.790</td><td>0.6814</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>23</td><td><a href='https://ensembl.org/Search/Results?q=MARCKSL1'>MARCKSL1</a></td><td>MARCKSL1</td><td>2177</td><td>0.790</td><td>0.7019</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>24</td><td><a href='https://ensembl.org/Search/Results?q=SOX11'>SOX11</a></td><td>SOX11</td><td>2717</td><td>0.668</td><td>0.6949</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>25</td><td><a href='https://ensembl.org/Search/Results?q=ASCL1'>ASCL1</a></td><td>ASCL1</td><td>2920</td><td>0.636</td><td>0.7022</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>26</td><td><a href='https://ensembl.org/Search/Results?q=TUBA1A'>TUBA1A</a></td><td>TUBA1A</td><td>4210</td><td>0.592</td><td>0.6594</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>27</td><td><a href='https://ensembl.org/Search/Results?q=DBN1'>DBN1</a></td><td>DBN1</td><td>4366</td><td>0.550</td><td>0.6666</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>28</td><td><a href='https://ensembl.org/Search/Results?q=SEZ6'>SEZ6</a></td><td>SEZ6</td><td>4493</td><td>0.518</td><td>0.6744</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>29</td><td><a href='https://ensembl.org/Search/Results?q=MLLT11'>MLLT11</a></td><td>MLLT11</td><td>4639</td><td>0.480</td><td>0.6803</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>30</td><td><a href='https://ensembl.org/Search/Results?q=SERINC5'>SERINC5</a></td><td>SERINC5</td><td>4738</td><td>0.465</td><td>0.6879</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>31</td><td><a href='https://ensembl.org/Search/Results?q=CHD7'>CHD7</a></td><td>CHD7</td><td>4776</td><td>0.458</td><td>0.6982</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>32</td><td><a href='https://ensembl.org/Search/Results?q=PFN2'>PFN2</a></td><td>PFN2</td><td>4863</td><td>0.443</td><td>0.7058</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>33</td><td><a href='https://ensembl.org/Search/Results?q=LMF1'>LMF1</a></td><td>LMF1</td><td>4938</td><td>0.431</td><td>0.7136</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>34</td><td><a href='https://ensembl.org/Search/Results?q=TSPAN13'>TSPAN13</a></td><td>TSPAN13</td><td>5257</td><td>0.383</td><td>0.7092</td><td>No</td></tr><tr><td class='lessen'>35</td><td><a href='https://ensembl.org/Search/Results?q=SOX4'>SOX4</a></td><td>SOX4</td><td>5577</td><td>0.338</td><td>0.7035</td><td>No</td></tr><tr><td class='lessen'>36</td><td><a href='https://ensembl.org/Search/Results?q=PTPRS'>PTPRS</a></td><td>PTPRS</td><td>5723</td><td>0.318</td><td>0.7052</td><td>No</td></tr><tr><td class='lessen'>37</td><td><a href='https://ensembl.org/Search/Results?q=HES6'>HES6</a></td><td>HES6</td><td>5983</td><td>0.288</td><td>0.7010</td><td>No</td></tr><tr><td class='lessen'>38</td><td><a href='https://ensembl.org/Search/Results?q=MEST'>MEST</a></td><td>MEST</td><td>6504</td><td>0.235</td><td>0.6836</td><td>No</td></tr><tr><td class='lessen'>39</td><td><a href='https://ensembl.org/Search/Results?q=PCBP4'>PCBP4</a></td><td>PCBP4</td><td>6976</td><td>0.193</td><td>0.6674</td><td>No</td></tr><tr><td class='lessen'>40</td><td><a href='https://ensembl.org/Search/Results?q=BEX1'>BEX1</a></td><td>BEX1</td><td>7341</td><td>0.160</td><td>0.6551</td><td>No</td></tr><tr><td class='lessen'>41</td><td><a href='https://ensembl.org/Search/Results?q=NEU4'>NEU4</a></td><td>NEU4</td><td>11275</td><td>0.000</td><td>0.4773</td><td>No</td></tr><tr><td class='lessen'>42</td><td><a href='https://ensembl.org/Search/Results?q=STMN1'>STMN1</a></td><td>STMN1</td><td>13112</td><td>-0.002</td><td>0.3944</td><td>No</td></tr><tr><td class='lessen'>43</td><td><a href='https://ensembl.org/Search/Results?q=TCF12'>TCF12</a></td><td>TCF12</td><td>14002</td><td>-0.060</td><td>0.3558</td><td>No</td></tr><tr><td class='lessen'>44</td><td><a href='https://ensembl.org/Search/Results?q=ETV1'>ETV1</a></td><td>ETV1</td><td>14589</td><td>-0.103</td><td>0.3320</td><td>No</td></tr><tr><td class='lessen'>45</td><td><a href='https://ensembl.org/Search/Results?q=GLCCI1'>GLCCI1</a></td><td>GLCCI1</td><td>15122</td><td>-0.142</td><td>0.3117</td><td>No</td></tr><tr><td class='lessen'>46</td><td><a href='https://ensembl.org/Search/Results?q=HIP1'>HIP1</a></td><td>HIP1</td><td>16324</td><td>-0.271</td><td>0.2644</td><td>No</td></tr><caption class='table'>Table: GSEA details <a href='NEFTEL_NPC1_2019.tsv'>[plain text format]</a></caption></table></div><br><div class='image'><img name='NEFTEL_NPC1_2019' src='NEFTEL_NPC1_2019_298.png'><br><br><caption>Fig 2: NEFTEL_NPC1_2019    <br> Blue-Pink O' Gram in the Space of the Analyzed GeneSet</caption></div><br><div class='image'><img name='gset_rnd_es_dist' src='gset_rnd_es_dist_299.png'><br><br><caption>Fig 3: NEFTEL_NPC1_2019: Random ES distribution    <br> Gene set null distribution of ES for <b>NEFTEL_NPC1_2019</b></caption></div><br></body></html>