<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/1999/REC-html401-19991224/loose.dtd"> <html><head><title>Details for gene set NEFTEL_NPC2_2019[GSEA]</title><link href='xtools.css' rel='stylesheet'><link href='http://www.gsea-msigdb.org/gsea/images/icon_16x16.png' rel='shortcut icon'></head><body><div class='keyValTable'><table cols='2' border='0'><th class='keyValTable'></th><th class='keyValTable'></th><tr><td>Dataset</td><td>ranaseq_carol_ns_sel_exprs.ranaseq_carol_ns_sel_phenotype.cls<br>#Fosl1_1_versus_Ctrl</td></tr><tr><td>Phenotype</td><td>ranaseq_carol_ns_sel_phenotype.cls#Fosl1_1_versus_Ctrl</td></tr><tr><td>Upregulated in class</td><td>Fosl1_1</td></tr><tr><td>GeneSet</td><td>NEFTEL_NPC2_2019</td></tr><tr><td>Enrichment Score (ES)</td><td>0.5472487</td></tr><tr><td>Normalized Enrichment Score (NES)</td><td>1.502836</td></tr><tr><td>Nominal p-value</td><td>0.030232558</td></tr><tr><td>FDR q-value</td><td>0.016200326</td></tr><tr><td>FWER p-Value</td><td>0.147</td></tr><caption class='table'>Table: GSEA Results Summary</caption></table></div><br><div class='image'><img name='enplot_NEFTEL_NPC2_2019' src='enplot_NEFTEL_NPC2_2019_315.png'><br><br><caption>Fig 1: Enrichment plot: NEFTEL_NPC2_2019    <br> Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List</caption></div><br><div class='richTable'><table cols='7' border='1'><th class='richTable'></th><th class='richTable'>SYMBOL</th><th class='richTable'>TITLE</th><th class='richTable'>RANK IN GENE LIST</th><th class='richTable'>RANK METRIC SCORE</th><th class='richTable'>RUNNING ES</th><th class='richTable'>CORE ENRICHMENT</th><tr><td class='lessen'>1</td><td><a href='https://ensembl.org/Search/Results?q=DLX5'>DLX5</a></td><td>DLX5</td><td>43</td><td>5.000</td><td>0.1245</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>2</td><td><a href='https://ensembl.org/Search/Results?q=SNAP25'>SNAP25</a></td><td>SNAP25</td><td>519</td><td>2.460</td><td>0.1652</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>3</td><td><a href='https://ensembl.org/Search/Results?q=KIF5A'>KIF5A</a></td><td>KIF5A</td><td>581</td><td>2.140</td><td>0.2166</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>4</td><td><a href='https://ensembl.org/Search/Results?q=ELAVL4'>ELAVL4</a></td><td>ELAVL4</td><td>823</td><td>1.701</td><td>0.2487</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>5</td><td><a href='https://ensembl.org/Search/Results?q=TAGLN3'>TAGLN3</a></td><td>TAGLN3</td><td>930</td><td>1.562</td><td>0.2834</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>6</td><td><a href='https://ensembl.org/Search/Results?q=IGFBPL1'>IGFBPL1</a></td><td>IGFBPL1</td><td>990</td><td>1.485</td><td>0.3183</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>7</td><td><a href='https://ensembl.org/Search/Results?q=DPYSL5'>DPYSL5</a></td><td>DPYSL5</td><td>1099</td><td>1.375</td><td>0.3482</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>8</td><td><a href='https://ensembl.org/Search/Results?q=NSG1'>NSG1</a></td><td>NSG1</td><td>1173</td><td>1.318</td><td>0.3782</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>9</td><td><a href='https://ensembl.org/Search/Results?q=SEPT3'>SEPT3</a></td><td>SEPT3</td><td>1404</td><td>1.157</td><td>0.3971</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>10</td><td><a href='https://ensembl.org/Search/Results?q=TUBB3'>TUBB3</a></td><td>TUBB3</td><td>1436</td><td>1.141</td><td>0.4245</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>11</td><td><a href='https://ensembl.org/Search/Results?q=PKIA'>PKIA</a></td><td>PKIA</td><td>1499</td><td>1.110</td><td>0.4498</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>12</td><td><a href='https://ensembl.org/Search/Results?q=DCX'>DCX</a></td><td>DCX</td><td>1578</td><td>1.074</td><td>0.4734</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>13</td><td><a href='https://ensembl.org/Search/Results?q=MIAT'>MIAT</a></td><td>MIAT</td><td>1630</td><td>1.041</td><td>0.4974</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>14</td><td><a href='https://ensembl.org/Search/Results?q=NREP'>NREP</a></td><td>NREP</td><td>1955</td><td>0.881</td><td>0.5051</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>15</td><td><a href='https://ensembl.org/Search/Results?q=TUBB2A'>TUBB2A</a></td><td>TUBB2A</td><td>1991</td><td>0.864</td><td>0.5254</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>16</td><td><a href='https://ensembl.org/Search/Results?q=NDRG4'>NDRG4</a></td><td>NDRG4</td><td>2198</td><td>0.782</td><td>0.5358</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>17</td><td><a href='https://ensembl.org/Search/Results?q=PAK3'>PAK3</a></td><td>PAK3</td><td>2492</td><td>0.709</td><td>0.5405</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>18</td><td><a href='https://ensembl.org/Search/Results?q=SOX11'>SOX11</a></td><td>SOX11</td><td>2717</td><td>0.668</td><td>0.5472</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>19</td><td><a href='https://ensembl.org/Search/Results?q=GNG3'>GNG3</a></td><td>GNG3</td><td>3880</td><td>0.602</td><td>0.5100</td><td>No</td></tr><tr><td class='lessen'>20</td><td><a href='https://ensembl.org/Search/Results?q=FNBP1L'>FNBP1L</a></td><td>FNBP1L</td><td>4257</td><td>0.580</td><td>0.5076</td><td>No</td></tr><tr><td class='lessen'>21</td><td><a href='https://ensembl.org/Search/Results?q=BLCAP'>BLCAP</a></td><td>BLCAP</td><td>4355</td><td>0.552</td><td>0.5172</td><td>No</td></tr><tr><td class='lessen'>22</td><td><a href='https://ensembl.org/Search/Results?q=DBN1'>DBN1</a></td><td>DBN1</td><td>4366</td><td>0.550</td><td>0.5307</td><td>No</td></tr><tr><td class='lessen'>23</td><td><a href='https://ensembl.org/Search/Results?q=MLLT11'>MLLT11</a></td><td>MLLT11</td><td>4639</td><td>0.480</td><td>0.5305</td><td>No</td></tr><tr><td class='lessen'>24</td><td><a href='https://ensembl.org/Search/Results?q=SOX4'>SOX4</a></td><td>SOX4</td><td>5577</td><td>0.338</td><td>0.4967</td><td>No</td></tr><tr><td class='lessen'>25</td><td><a href='https://ensembl.org/Search/Results?q=DPYSL3'>DPYSL3</a></td><td>DPYSL3</td><td>7128</td><td>0.179</td><td>0.4312</td><td>No</td></tr><tr><td class='lessen'>26</td><td><a href='https://ensembl.org/Search/Results?q=TCF4'>TCF4</a></td><td>TCF4</td><td>7537</td><td>0.144</td><td>0.4165</td><td>No</td></tr><tr><td class='lessen'>27</td><td><a href='https://ensembl.org/Search/Results?q=CEP170'>CEP170</a></td><td>CEP170</td><td>8391</td><td>0.093</td><td>0.3803</td><td>No</td></tr><tr><td class='lessen'>28</td><td><a href='https://ensembl.org/Search/Results?q=STMN4'>STMN4</a></td><td>STMN4</td><td>9371</td><td>0.027</td><td>0.3367</td><td>No</td></tr><tr><td class='lessen'>29</td><td><a href='https://ensembl.org/Search/Results?q=STMN1'>STMN1</a></td><td>STMN1</td><td>13112</td><td>-0.002</td><td>0.1678</td><td>No</td></tr><tr><td class='lessen'>30</td><td><a href='https://ensembl.org/Search/Results?q=DDAH2'>DDAH2</a></td><td>DDAH2</td><td>13226</td><td>-0.004</td><td>0.1628</td><td>No</td></tr><tr><td class='lessen'>31</td><td><a href='https://ensembl.org/Search/Results?q=NFIX'>NFIX</a></td><td>NFIX</td><td>13242</td><td>-0.006</td><td>0.1623</td><td>No</td></tr><tr><td class='lessen'>32</td><td><a href='https://ensembl.org/Search/Results?q=NFIB'>NFIB</a></td><td>NFIB</td><td>14006</td><td>-0.061</td><td>0.1293</td><td>No</td></tr><tr><td class='lessen'>33</td><td><a href='https://ensembl.org/Search/Results?q=RBFOX2'>RBFOX2</a></td><td>RBFOX2</td><td>14154</td><td>-0.071</td><td>0.1245</td><td>No</td></tr><tr><td class='lessen'>34</td><td><a href='https://ensembl.org/Search/Results?q=UCHL1'>UCHL1</a></td><td>UCHL1</td><td>14397</td><td>-0.088</td><td>0.1158</td><td>No</td></tr><tr><td class='lessen'>35</td><td><a href='https://ensembl.org/Search/Results?q=MAP1B'>MAP1B</a></td><td>MAP1B</td><td>14686</td><td>-0.111</td><td>0.1056</td><td>No</td></tr><tr><td class='lessen'>36</td><td><a href='https://ensembl.org/Search/Results?q=KIF5C'>KIF5C</a></td><td>KIF5C</td><td>15503</td><td>-0.179</td><td>0.0732</td><td>No</td></tr><tr><td class='lessen'>37</td><td><a href='https://ensembl.org/Search/Results?q=RND3'>RND3</a></td><td>RND3</td><td>16976</td><td>-0.377</td><td>0.0163</td><td>No</td></tr><tr><td class='lessen'>38</td><td><a href='https://ensembl.org/Search/Results?q=LBH'>LBH</a></td><td>LBH</td><td>17033</td><td>-0.387</td><td>0.0235</td><td>No</td></tr><tr><td class='lessen'>39</td><td><a href='https://ensembl.org/Search/Results?q=CD200'>CD200</a></td><td>CD200</td><td>17521</td><td>-0.494</td><td>0.0140</td><td>No</td></tr><tr><td class='lessen'>40</td><td><a href='https://ensembl.org/Search/Results?q=STMN2'>STMN2</a></td><td>STMN2</td><td>19543</td><td>-0.666</td><td>-0.0605</td><td>No</td></tr><tr><td class='lessen'>41</td><td><a href='https://ensembl.org/Search/Results?q=ENO2'>ENO2</a></td><td>ENO2</td><td>20010</td><td>-0.831</td><td>-0.0605</td><td>No</td></tr><tr><td class='lessen'>42</td><td><a href='https://ensembl.org/Search/Results?q=ATP1B1'>ATP1B1</a></td><td>ATP1B1</td><td>20221</td><td>-0.959</td><td>-0.0457</td><td>No</td></tr><tr><td class='lessen'>43</td><td><a href='https://ensembl.org/Search/Results?q=DYNC1I1'>DYNC1I1</a></td><td>DYNC1I1</td><td>21435</td><td>-2.235</td><td>-0.0440</td><td>No</td></tr><tr><td class='lessen'>44</td><td><a href='https://ensembl.org/Search/Results?q=CRABP1'>CRABP1</a></td><td>CRABP1</td><td>21753</td><td>-3.064</td><td>0.0191</td><td>No</td></tr><caption class='table'>Table: GSEA details <a href='NEFTEL_NPC2_2019.tsv'>[plain text format]</a></caption></table></div><br><div class='image'><img name='NEFTEL_NPC2_2019' src='NEFTEL_NPC2_2019_316.png'><br><br><caption>Fig 2: NEFTEL_NPC2_2019    <br> Blue-Pink O' Gram in the Space of the Analyzed GeneSet</caption></div><br><div class='image'><img name='gset_rnd_es_dist' src='gset_rnd_es_dist_317.png'><br><br><caption>Fig 3: NEFTEL_NPC2_2019: Random ES distribution    <br> Gene set null distribution of ES for <b>NEFTEL_NPC2_2019</b></caption></div><br></body></html>