<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/1999/REC-html401-19991224/loose.dtd"> <html><head><title>Details for gene set NEFTEL_OPC_2019[GSEA]</title><link href='xtools.css' rel='stylesheet'><link href='http://www.gsea-msigdb.org/gsea/images/icon_16x16.png' rel='shortcut icon'></head><body><div class='keyValTable'><table cols='2' border='0'><th class='keyValTable'></th><th class='keyValTable'></th><tr><td>Dataset</td><td>ranaseq_carol_ns_sel_exprs.ranaseq_carol_ns_sel_phenotype.cls<br>#Fosl1_1_versus_Ctrl</td></tr><tr><td>Phenotype</td><td>ranaseq_carol_ns_sel_phenotype.cls#Fosl1_1_versus_Ctrl</td></tr><tr><td>Upregulated in class</td><td>Fosl1_1</td></tr><tr><td>GeneSet</td><td>NEFTEL_OPC_2019</td></tr><tr><td>Enrichment Score (ES)</td><td>0.57972056</td></tr><tr><td>Normalized Enrichment Score (NES)</td><td>1.6086946</td></tr><tr><td>Nominal p-value</td><td>0.006263048</td></tr><tr><td>FDR q-value</td><td>0.007202475</td></tr><tr><td>FWER p-Value</td><td>0.052</td></tr><caption class='table'>Table: GSEA Results Summary</caption></table></div><br><div class='image'><img name='enplot_NEFTEL_OPC_2019' src='enplot_NEFTEL_OPC_2019_309.png'><br><br><caption>Fig 1: Enrichment plot: NEFTEL_OPC_2019    <br> Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List</caption></div><br><div class='richTable'><table cols='7' border='1'><th class='richTable'></th><th class='richTable'>SYMBOL</th><th class='richTable'>TITLE</th><th class='richTable'>RANK IN GENE LIST</th><th class='richTable'>RANK METRIC SCORE</th><th class='richTable'>RUNNING ES</th><th class='richTable'>CORE ENRICHMENT</th><tr><td class='lessen'>1</td><td><a href='https://ensembl.org/Search/Results?q=FGF12'>FGF12</a></td><td>FGF12</td><td>260</td><td>4.993</td><td>0.0848</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>2</td><td><a href='https://ensembl.org/Search/Results?q=FXYD6'>FXYD6</a></td><td>FXYD6</td><td>329</td><td>3.517</td><td>0.1497</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>3</td><td><a href='https://ensembl.org/Search/Results?q=GPR17'>GPR17</a></td><td>GPR17</td><td>388</td><td>2.821</td><td>0.2016</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>4</td><td><a href='https://ensembl.org/Search/Results?q=NLGN3'>NLGN3</a></td><td>NLGN3</td><td>696</td><td>1.919</td><td>0.2248</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>5</td><td><a href='https://ensembl.org/Search/Results?q=TNR'>TNR</a></td><td>TNR</td><td>837</td><td>1.676</td><td>0.2509</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>6</td><td><a href='https://ensembl.org/Search/Results?q=OMG'>OMG</a></td><td>OMG</td><td>923</td><td>1.571</td><td>0.2774</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>7</td><td><a href='https://ensembl.org/Search/Results?q=NKAIN4'>NKAIN4</a></td><td>NKAIN4</td><td>977</td><td>1.498</td><td>0.3039</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>8</td><td><a href='https://ensembl.org/Search/Results?q=CADM2'>CADM2</a></td><td>CADM2</td><td>1057</td><td>1.409</td><td>0.3276</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>9</td><td><a href='https://ensembl.org/Search/Results?q=CNP'>CNP</a></td><td>CNP</td><td>1124</td><td>1.356</td><td>0.3508</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>10</td><td><a href='https://ensembl.org/Search/Results?q=THY1'>THY1</a></td><td>THY1</td><td>1133</td><td>1.343</td><td>0.3764</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>11</td><td><a href='https://ensembl.org/Search/Results?q=CNTN1'>CNTN1</a></td><td>CNTN1</td><td>1268</td><td>1.242</td><td>0.3944</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>12</td><td><a href='https://ensembl.org/Search/Results?q=TTYH1'>TTYH1</a></td><td>TTYH1</td><td>1289</td><td>1.228</td><td>0.4172</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>13</td><td><a href='https://ensembl.org/Search/Results?q=PHYHIPL'>PHYHIPL</a></td><td>PHYHIPL</td><td>1368</td><td>1.172</td><td>0.4363</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>14</td><td><a href='https://ensembl.org/Search/Results?q=BCAS1'>BCAS1</a></td><td>BCAS1</td><td>1428</td><td>1.143</td><td>0.4558</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>15</td><td><a href='https://ensembl.org/Search/Results?q=BCAN'>BCAN</a></td><td>BCAN</td><td>1442</td><td>1.138</td><td>0.4772</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>16</td><td><a href='https://ensembl.org/Search/Results?q=GPR37L1'>GPR37L1</a></td><td>GPR37L1</td><td>1665</td><td>1.027</td><td>0.4870</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>17</td><td><a href='https://ensembl.org/Search/Results?q=PTPRZ1'>PTPRZ1</a></td><td>PTPRZ1</td><td>1701</td><td>1.008</td><td>0.5049</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>18</td><td><a href='https://ensembl.org/Search/Results?q=SCRG1'>SCRG1</a></td><td>SCRG1</td><td>1740</td><td>0.986</td><td>0.5222</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>19</td><td><a href='https://ensembl.org/Search/Results?q=FABP5'>FABP5</a></td><td>FABP5</td><td>1785</td><td>0.963</td><td>0.5389</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>20</td><td><a href='https://ensembl.org/Search/Results?q=PLLP'>PLLP</a></td><td>PLLP</td><td>2039</td><td>0.845</td><td>0.5438</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>21</td><td><a href='https://ensembl.org/Search/Results?q=OLIG1'>OLIG1</a></td><td>OLIG1</td><td>2160</td><td>0.796</td><td>0.5537</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>22</td><td><a href='https://ensembl.org/Search/Results?q=LHFPL3'>LHFPL3</a></td><td>LHFPL3</td><td>2209</td><td>0.773</td><td>0.5665</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>23</td><td><a href='https://ensembl.org/Search/Results?q=PLP1'>PLP1</a></td><td>PLP1</td><td>2275</td><td>0.750</td><td>0.5781</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>24</td><td><a href='https://ensembl.org/Search/Results?q=PCDHGC3'>PCDHGC3</a></td><td>PCDHGC3</td><td>2540</td><td>0.703</td><td>0.5797</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>25</td><td><a href='https://ensembl.org/Search/Results?q=RTKN'>RTKN</a></td><td>RTKN</td><td>3228</td><td>0.621</td><td>0.5607</td><td>No</td></tr><tr><td class='lessen'>26</td><td><a href='https://ensembl.org/Search/Results?q=VCAN'>VCAN</a></td><td>VCAN</td><td>4379</td><td>0.546</td><td>0.5193</td><td>No</td></tr><tr><td class='lessen'>27</td><td><a href='https://ensembl.org/Search/Results?q=SERINC5'>SERINC5</a></td><td>SERINC5</td><td>4738</td><td>0.465</td><td>0.5121</td><td>No</td></tr><tr><td class='lessen'>28</td><td><a href='https://ensembl.org/Search/Results?q=LMF1'>LMF1</a></td><td>LMF1</td><td>4938</td><td>0.431</td><td>0.5114</td><td>No</td></tr><tr><td class='lessen'>29</td><td><a href='https://ensembl.org/Search/Results?q=TMEM206'>TMEM206</a></td><td>TMEM206</td><td>5545</td><td>0.343</td><td>0.4907</td><td>No</td></tr><tr><td class='lessen'>30</td><td><a href='https://ensembl.org/Search/Results?q=LIMA1'>LIMA1</a></td><td>LIMA1</td><td>5867</td><td>0.304</td><td>0.4820</td><td>No</td></tr><tr><td class='lessen'>31</td><td><a href='https://ensembl.org/Search/Results?q=SIRT2'>SIRT2</a></td><td>SIRT2</td><td>6235</td><td>0.261</td><td>0.4705</td><td>No</td></tr><tr><td class='lessen'>32</td><td><a href='https://ensembl.org/Search/Results?q=DBI'>DBI</a></td><td>DBI</td><td>6371</td><td>0.245</td><td>0.4691</td><td>No</td></tr><tr><td class='lessen'>33</td><td><a href='https://ensembl.org/Search/Results?q=GPM6B'>GPM6B</a></td><td>GPM6B</td><td>6372</td><td>0.245</td><td>0.4739</td><td>No</td></tr><tr><td class='lessen'>34</td><td><a href='https://ensembl.org/Search/Results?q=ALCAM'>ALCAM</a></td><td>ALCAM</td><td>7811</td><td>0.131</td><td>0.4114</td><td>No</td></tr><tr><td class='lessen'>35</td><td><a href='https://ensembl.org/Search/Results?q=RNF13'>RNF13</a></td><td>RNF13</td><td>8368</td><td>0.094</td><td>0.3881</td><td>No</td></tr><tr><td class='lessen'>36</td><td><a href='https://ensembl.org/Search/Results?q=RAB31'>RAB31</a></td><td>RAB31</td><td>8535</td><td>0.084</td><td>0.3822</td><td>No</td></tr><tr><td class='lessen'>37</td><td><a href='https://ensembl.org/Search/Results?q=EPB41L2'>EPB41L2</a></td><td>EPB41L2</td><td>8989</td><td>0.053</td><td>0.3628</td><td>No</td></tr><tr><td class='lessen'>38</td><td><a href='https://ensembl.org/Search/Results?q=PGRMC1'>PGRMC1</a></td><td>PGRMC1</td><td>9121</td><td>0.045</td><td>0.3577</td><td>No</td></tr><tr><td class='lessen'>39</td><td><a href='https://ensembl.org/Search/Results?q=NEU4'>NEU4</a></td><td>NEU4</td><td>11275</td><td>0.000</td><td>0.2605</td><td>No</td></tr><tr><td class='lessen'>40</td><td><a href='https://ensembl.org/Search/Results?q=TNS3'>TNS3</a></td><td>TNS3</td><td>15500</td><td>-0.179</td><td>0.0731</td><td>No</td></tr><tr><td class='lessen'>41</td><td><a href='https://ensembl.org/Search/Results?q=P2RX7'>P2RX7</a></td><td>P2RX7</td><td>16761</td><td>-0.340</td><td>0.0227</td><td>No</td></tr><tr><td class='lessen'>42</td><td><a href='https://ensembl.org/Search/Results?q=PSAT1'>PSAT1</a></td><td>PSAT1</td><td>16921</td><td>-0.366</td><td>0.0226</td><td>No</td></tr><tr><td class='lessen'>43</td><td><a href='https://ensembl.org/Search/Results?q=FIBIN'>FIBIN</a></td><td>FIBIN</td><td>21025</td><td>-1.648</td><td>-0.1309</td><td>No</td></tr><tr><td class='lessen'>44</td><td><a href='https://ensembl.org/Search/Results?q=APOD'>APOD</a></td><td>APOD</td><td>21866</td><td>-4.460</td><td>-0.0827</td><td>No</td></tr><tr><td class='lessen'>45</td><td><a href='https://ensembl.org/Search/Results?q=HRASLS'>HRASLS</a></td><td>HRASLS</td><td>21892</td><td>-5.000</td><td>0.0128</td><td>No</td></tr><caption class='table'>Table: GSEA details <a href='NEFTEL_OPC_2019.tsv'>[plain text format]</a></caption></table></div><br><div class='image'><img name='NEFTEL_OPC_2019' src='NEFTEL_OPC_2019_310.png'><br><br><caption>Fig 2: NEFTEL_OPC_2019    <br> Blue-Pink O' Gram in the Space of the Analyzed GeneSet</caption></div><br><div class='image'><img name='gset_rnd_es_dist' src='gset_rnd_es_dist_311.png'><br><br><caption>Fig 3: NEFTEL_OPC_2019: Random ES distribution    <br> Gene set null distribution of ES for <b>NEFTEL_OPC_2019</b></caption></div><br></body></html>