<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/1999/REC-html401-19991224/loose.dtd"> <html><head><title>Details for gene set WANG_PN_2017[GSEA]</title><link href='xtools.css' rel='stylesheet'><link href='http://www.gsea-msigdb.org/gsea/images/icon_16x16.png' rel='shortcut icon'></head><body><div class='keyValTable'><table cols='2' border='0'><th class='keyValTable'></th><th class='keyValTable'></th><tr><td>Dataset</td><td>ranaseq_carol_ns_sel_exprs.ranaseq_carol_ns_sel_phenotype.cls<br>#Fosl1_1_versus_Ctrl</td></tr><tr><td>Phenotype</td><td>ranaseq_carol_ns_sel_phenotype.cls#Fosl1_1_versus_Ctrl</td></tr><tr><td>Upregulated in class</td><td>Fosl1_1</td></tr><tr><td>GeneSet</td><td>WANG_PN_2017</td></tr><tr><td>Enrichment Score (ES)</td><td>0.53923994</td></tr><tr><td>Normalized Enrichment Score (NES)</td><td>1.4364635</td></tr><tr><td>Nominal p-value</td><td>0.041666668</td></tr><tr><td>FDR q-value</td><td>0.025115091</td></tr><tr><td>FWER p-Value</td><td>0.234</td></tr><caption class='table'>Table: GSEA Results Summary</caption></table></div><br><div class='image'><img name='enplot_WANG_PN_2017' src='enplot_WANG_PN_2017_318.png'><br><br><caption>Fig 1: Enrichment plot: WANG_PN_2017    <br> Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List</caption></div><br><div class='richTable'><table cols='7' border='1'><th class='richTable'></th><th class='richTable'>SYMBOL</th><th class='richTable'>TITLE</th><th class='richTable'>RANK IN GENE LIST</th><th class='richTable'>RANK METRIC SCORE</th><th class='richTable'>RUNNING ES</th><th class='richTable'>CORE ENRICHMENT</th><tr><td class='lessen'>1</td><td><a href='https://ensembl.org/Search/Results?q=SOX10'>SOX10</a></td><td>SOX10</td><td>47</td><td>5.000</td><td>0.0867</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>2</td><td><a href='https://ensembl.org/Search/Results?q=PAK7'>PAK7</a></td><td>PAK7</td><td>261</td><td>4.993</td><td>0.1658</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>3</td><td><a href='https://ensembl.org/Search/Results?q=RAB33A'>RAB33A</a></td><td>RAB33A</td><td>369</td><td>2.975</td><td>0.2139</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>4</td><td><a href='https://ensembl.org/Search/Results?q=GPR17'>GPR17</a></td><td>GPR17</td><td>388</td><td>2.821</td><td>0.2632</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>5</td><td><a href='https://ensembl.org/Search/Results?q=SMPD3'>SMPD3</a></td><td>SMPD3</td><td>487</td><td>2.648</td><td>0.3058</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>6</td><td><a href='https://ensembl.org/Search/Results?q=SLC1A1'>SLC1A1</a></td><td>SLC1A1</td><td>491</td><td>2.601</td><td>0.3519</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>7</td><td><a href='https://ensembl.org/Search/Results?q=MAST1'>MAST1</a></td><td>MAST1</td><td>592</td><td>2.093</td><td>0.3846</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>8</td><td><a href='https://ensembl.org/Search/Results?q=EPHB1'>EPHB1</a></td><td>EPHB1</td><td>632</td><td>2.059</td><td>0.4194</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>9</td><td><a href='https://ensembl.org/Search/Results?q=IL1RAPL1'>IL1RAPL1</a></td><td>IL1RAPL1</td><td>654</td><td>1.998</td><td>0.4540</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>10</td><td><a href='https://ensembl.org/Search/Results?q=NHLH1'>NHLH1</a></td><td>NHLH1</td><td>854</td><td>1.665</td><td>0.4746</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>11</td><td><a href='https://ensembl.org/Search/Results?q=JPH3'>JPH3</a></td><td>JPH3</td><td>991</td><td>1.483</td><td>0.4948</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>12</td><td><a href='https://ensembl.org/Search/Results?q=KCNK3'>KCNK3</a></td><td>KCNK3</td><td>1322</td><td>1.205</td><td>0.5013</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>13</td><td><a href='https://ensembl.org/Search/Results?q=MYT1'>MYT1</a></td><td>MYT1</td><td>1426</td><td>1.144</td><td>0.5169</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>14</td><td><a href='https://ensembl.org/Search/Results?q=CDKN1C'>CDKN1C</a></td><td>CDKN1C</td><td>1542</td><td>1.089</td><td>0.5311</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>15</td><td><a href='https://ensembl.org/Search/Results?q=GABRB3'>GABRB3</a></td><td>GABRB3</td><td>1749</td><td>0.981</td><td>0.5392</td><td bgcolor='#CCFFCC'>Yes</td></tr><tr><td class='lessen'>16</td><td><a href='https://ensembl.org/Search/Results?q=BCL11A'>BCL11A</a></td><td>BCL11A</td><td>2250</td><td>0.759</td><td>0.5301</td><td>No</td></tr><tr><td class='lessen'>17</td><td><a href='https://ensembl.org/Search/Results?q=CENPJ'>CENPJ</a></td><td>CENPJ</td><td>2741</td><td>0.661</td><td>0.5198</td><td>No</td></tr><tr><td class='lessen'>18</td><td><a href='https://ensembl.org/Search/Results?q=GRID2'>GRID2</a></td><td>GRID2</td><td>3130</td><td>0.631</td><td>0.5134</td><td>No</td></tr><tr><td class='lessen'>19</td><td><a href='https://ensembl.org/Search/Results?q=SIM2'>SIM2</a></td><td>SIM2</td><td>3864</td><td>0.602</td><td>0.4910</td><td>No</td></tr><tr><td class='lessen'>20</td><td><a href='https://ensembl.org/Search/Results?q=PLCB4'>PLCB4</a></td><td>PLCB4</td><td>4533</td><td>0.505</td><td>0.4698</td><td>No</td></tr><tr><td class='lessen'>21</td><td><a href='https://ensembl.org/Search/Results?q=MYB'>MYB</a></td><td>MYB</td><td>4550</td><td>0.502</td><td>0.4780</td><td>No</td></tr><tr><td class='lessen'>22</td><td><a href='https://ensembl.org/Search/Results?q=PDGFRA'>PDGFRA</a></td><td>PDGFRA</td><td>5008</td><td>0.420</td><td>0.4648</td><td>No</td></tr><tr><td class='lessen'>23</td><td><a href='https://ensembl.org/Search/Results?q=MTSS1'>MTSS1</a></td><td>MTSS1</td><td>5291</td><td>0.378</td><td>0.4588</td><td>No</td></tr><tr><td class='lessen'>24</td><td><a href='https://ensembl.org/Search/Results?q=HDAC2'>HDAC2</a></td><td>HDAC2</td><td>7235</td><td>0.170</td><td>0.3741</td><td>No</td></tr><tr><td class='lessen'>25</td><td><a href='https://ensembl.org/Search/Results?q=PTTG1'>PTTG1</a></td><td>PTTG1</td><td>8980</td><td>0.054</td><td>0.2963</td><td>No</td></tr><tr><td class='lessen'>26</td><td><a href='https://ensembl.org/Search/Results?q=TCP1'>TCP1</a></td><td>TCP1</td><td>13831</td><td>-0.048</td><td>0.0781</td><td>No</td></tr><tr><td class='lessen'>27</td><td><a href='https://ensembl.org/Search/Results?q=DCTN3'>DCTN3</a></td><td>DCTN3</td><td>14020</td><td>-0.062</td><td>0.0707</td><td>No</td></tr><tr><td class='lessen'>28</td><td><a href='https://ensembl.org/Search/Results?q=PFDN2'>PFDN2</a></td><td>PFDN2</td><td>14206</td><td>-0.076</td><td>0.0637</td><td>No</td></tr><tr><td class='lessen'>29</td><td><a href='https://ensembl.org/Search/Results?q=RASL11B'>RASL11B</a></td><td>RASL11B</td><td>15275</td><td>-0.156</td><td>0.0182</td><td>No</td></tr><tr><td class='lessen'>30</td><td><a href='https://ensembl.org/Search/Results?q=NARF'>NARF</a></td><td>NARF</td><td>16061</td><td>-0.239</td><td>-0.0130</td><td>No</td></tr><tr><td class='lessen'>31</td><td><a href='https://ensembl.org/Search/Results?q=NMU'>NMU</a></td><td>NMU</td><td>19443</td><td>-0.649</td><td>-0.1542</td><td>No</td></tr><tr><td class='lessen'>32</td><td><a href='https://ensembl.org/Search/Results?q=ERBB3'>ERBB3</a></td><td>ERBB3</td><td>19530</td><td>-0.663</td><td>-0.1463</td><td>No</td></tr><tr><td class='lessen'>33</td><td><a href='https://ensembl.org/Search/Results?q=BAMBI'>BAMBI</a></td><td>BAMBI</td><td>19688</td><td>-0.700</td><td>-0.1410</td><td>No</td></tr><tr><td class='lessen'>34</td><td><a href='https://ensembl.org/Search/Results?q=PKMYT1'>PKMYT1</a></td><td>PKMYT1</td><td>20357</td><td>-1.050</td><td>-0.1525</td><td>No</td></tr><tr><td class='lessen'>35</td><td><a href='https://ensembl.org/Search/Results?q=DACH1'>DACH1</a></td><td>DACH1</td><td>20975</td><td>-1.573</td><td>-0.1524</td><td>No</td></tr><tr><td class='lessen'>36</td><td><a href='https://ensembl.org/Search/Results?q=CLGN'>CLGN</a></td><td>CLGN</td><td>20999</td><td>-1.620</td><td>-0.1246</td><td>No</td></tr><tr><td class='lessen'>37</td><td><a href='https://ensembl.org/Search/Results?q=HRASLS'>HRASLS</a></td><td>HRASLS</td><td>21892</td><td>-5.000</td><td>-0.0761</td><td>No</td></tr><tr><td class='lessen'>38</td><td><a href='https://ensembl.org/Search/Results?q=VIPR2'>VIPR2</a></td><td>VIPR2</td><td>21941</td><td>-5.000</td><td>0.0106</td><td>No</td></tr><caption class='table'>Table: GSEA details <a href='WANG_PN_2017.tsv'>[plain text format]</a></caption></table></div><br><div class='image'><img name='WANG_PN_2017' src='WANG_PN_2017_319.png'><br><br><caption>Fig 2: WANG_PN_2017    <br> Blue-Pink O' Gram in the Space of the Analyzed GeneSet</caption></div><br><div class='image'><img name='gset_rnd_es_dist' src='gset_rnd_es_dist_320.png'><br><br><caption>Fig 3: WANG_PN_2017: Random ES distribution    <br> Gene set null distribution of ES for <b>WANG_PN_2017</b></caption></div><br></body></html>