# DREME 5.0.4
#     command: dreme -oc SilencerVsStrongEnhancer -p silencer.fasta -n strongEnhancer.fasta -dna -eps -mink 6 -maxk 12 -e 0.05
#   positives: 837 from silencer.fasta (Tue Jul 28 11:35:47 CDT 2020)
#   negatives: 1051 from strongEnhancer.fasta (Tue Jul 28 11:35:47 CDT 2020)
#        host: n054
#        when: Tue Jul 28 11:40:48 CDT 2020

MEME version 5.0.4

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.239 C 0.274 G 0.239 T 0.247


MOTIF ARAAATC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ARAAATC    GATTTYT         71         28   1.4e-008   6.4e-003
#          AGAAATC    GATTTCT         52         21   2.0e-006   8.9e-001
#          AAAAATC    GATTTTT         23          7   2.9e-004   1.3e+002

letter-probability matrix: alength= 4 w= 7 nsites= 77 E= 6.4e-003
1.000000 0.000000 0.000000 0.000000
0.298701 0.000000 0.701299 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGTATB DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGTATB     VATACC        125         73   1.5e-008   6.7e-003
#           GGTATT     AATACC         61         36   1.2e-004   5.6e+001
#           GGTATG     CATACC         40         24   2.2e-003   1.0e+003
#           GGTATC     GATACC         28         14   2.7e-003   1.2e+003

letter-probability matrix: alength= 4 w= 6 nsites= 135 E= 6.7e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.207407 0.318519 0.474074


MOTIF CTCTGCCTCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST  CTCTGCCTCC GGAGGCAGAG         27          2   3.1e-008   1.4e-002
#       CTCTGCCTCC GGAGGCAGAG         27          2   3.1e-008   1.4e-002

letter-probability matrix: alength= 4 w= 10 nsites= 27 E= 1.4e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACTTYY DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACTTYY     RRAAGT        279        213   1.0e-010   4.5e-005
#           ACTTCT     AGAAGT         93         67   1.7e-004   7.7e+001
#           ACTTTC     GAAAGT         73         48   1.9e-004   8.3e+001
#           ACTTTT     AAAAGT         57         34   2.5e-004   1.1e+002
#           ACTTCC     GGAAGT         99         84   3.4e-003   1.5e+003

letter-probability matrix: alength= 4 w= 6 nsites= 336 E= 4.5e-005
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.601190 0.000000 0.398810
0.000000 0.532738 0.000000 0.467262


# Stopping reason: E-value threshold exceeded
#    Running time: 238.92 seconds