<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/1999/REC-html401-19991224/loose.dtd"> <html><head><title>Index for xtools.gsea.Gsea v5B_ADCP_wk26_method_2_GT.Gsea.1592331997827</title><link href='xtools.css' rel='stylesheet'><link href='http://www.gsea-msigdb.org/gsea/images/icon_16x16.png' rel='shortcut icon'></head><body><div id="footer" style="width: 905; height: 35"> <h3 style="text-align: left"><font color="#808080">GSEA Report for Dataset RV306_v5B_forADCP_GSEA</font></h3> </div><div><h4>Enrichment in phenotype: <b>High (12 samples)</b></h4><ul><li>1 / 1 gene sets are upregulated in phenotype <b>High</b><li>1 gene sets are significant at FDR < 25%<li>1 gene sets are significantly enriched at nominal pvalue < 1%<li>1 gene sets are significantly enriched at nominal pvalue < 5%<li><a href='pos_snapshot.html'>Snapshot</a> of enrichment results<li>Detailed <a href='gsea_report_for_High_1592331997827.html'>enrichment results in html</a> format<li>Detailed <a href='gsea_report_for_High_1592331997827.xls'>enrichment results in excel</a> format (tab delimited text)<li><a href='http://www.gsea-msigdb.org/gsea/doc/GSEAUserGuideFrame.html?_Interpreting_GSEA_Results'>Guide to</a> interpret results</ul></div><div><h4>Enrichment in phenotype: <b>Low (9 samples)</b></h4><ul><li>None of the gene sets are enriched in phenotype <b>Low</b><li><a href='http://www.gsea-msigdb.org/gsea/doc/GSEAUserGuideFrame.html?_Interpreting_GSEA_Results'>Guide to</a> interpret results</ul></div><div><h4>Dataset details</h4><ul><li>The dataset has 12300 native features<li>After collapsing features into gene symbols, there are: 12288 genes</ul></div><div><h4>Gene set details</h4><ul><li>Gene set size filters (min=9, max=500) resulted in filtering out 0 / 1 gene sets<li>The remaining 1 gene sets were used in the analysis<li>List of <a href='gene_set_sizes.xls'>gene sets used and their sizes</a> (restricted to features in the specified dataset)</ul></div><div><h4>Gene markers for the <b>High</b><i> versus </i><b>Low</b> comparison</h4><ul><li>The dataset has 12288 features (genes)<li># of markers for phenotype <b>High</b>: 5707 (46.4% ) with correlation area 45.5%<li># of markers for phenotype <b>Low</b>: 6581 (53.6% ) with correlation area 54.5%<li>Detailed <a href='ranked_gene_list_High_versus_Low_1592331997827.xls'>rank ordered gene list</a> for all features in the dataset<li><a href='heat_map_corr_plot.html'>Heat map and gene list correlation </a> profile for all features in the dataset</ul></div><div><h4>Global statistics and plots</h4><ul><li>Plot of <a href='pvalues_vs_nes_plot.png'>p-values <i>vs.</i> NES</a> <li><a href='global_es_histogram.png'>Global ES</a> histogram</ul></div><div><h4>Other</h4><ul><li><a href='v5B_ADCP_wk26_method_2_GT.Gsea.1592331997827.rpt'>Parameters</a> used for this analysis</ul></div><div><h4>Comments</h4><ul><li>Timestamp used as random seed: 1592331998428</ul></div><div><br></div><hr class="solid_line"/> <div id="footer"> Report: v5B_ADCP_wk26_method_2_GT.Gsea.1592331997827.rpt   by user: gkundu  <div class="date">xtools.gsea.Gsea [Tue, Jun 16, '20 2 PM 26]</div> <div class="contact">Website: <a href="http://www.gsea-msigdb.org/gsea">www.gsea-msigdb.org/gsea</a> Questions & Suggestions: <a href="http://www.gsea-msigdb.org/gsea/contact.jsp">Contact page</a></div> <div class="spacer"> </div> </div> </body></html>