@article{bib1, author = {Bates, AS and Manton, JD and Jagannathan, SR and Costa, M and Schlegel, P and Rohlfing, T and Jefferis, GS}, journal = {eLife}, year = {2020}, title = {The natverse, a versatile toolbox for combining and analysing neuroanatomical data}, volume = {9}, } @article{bib2, author = {Bell, ML and Earl, JB and Britt, SG}, journal = {The Journal of Comparative Neurology}, year = {2007}, pages = {75--85}, title = {Two types of {Drosophila} {R7} photoreceptor cells are arranged randomly: a model for stochastic cell-fate determination}, volume = {502}, } @article{bib3, author = {Bogovic, JA and Otsuna, H and Heinrich, L and Ito, M and Jeter, J and Meissner, G and Nern, A and Colonell, J and Malkesman, O and Ito, K and Saalfeld, S}, journal = {PLOS ONE}, year = {2020}, title = {An unbiased template of the {Drosophila} brain and ventral nerve cord}, volume = {15}, } @article{bib4, author = {Busch, S and Selcho, M and Ito, K and Tanimoto, H}, journal = {The Journal of Comparative Neurology}, year = {2009}, pages = {643--667}, title = {A map of octopaminergic neurons in the {Drosophila} brain}, volume = {513}, } @article{bib5, author = {Chin, AL and Lin, CY and Fu, TF and Dickson, BJ and Chiang, AS}, journal = {The Journal of Comparative Neurology}, year = {2014}, pages = {3795--3816}, title = {Diversity and wiring variability of visual local neurons in the {Drosophila} medulla {M6} stratum}, volume = {522}, } @article{bib6, author = {Chou, WH and Hall, KJ and Wilson, DB and Wideman, CL and Townson, SM and Chadwell, LV and Britt, SG}, journal = {Neuron}, year = {1996}, pages = {1101--1115}, title = {Identification of a novel {Drosophila} opsin reveals specific patterning of the {R7} and {R8} photoreceptor cells}, volume = {17}, } @article{bib7, author = {Clements, J and Dolafi, T and Umayam, L and Neubarth, NL and Berg, S and Scheffer, LK and Plaza, SM}, journal = {bioRxiv}, year = {2020}, title = {NeuPrint: Analysis {Tools} for {EM} {Connectomics}}, } @article{bib8, author = {Courgeon, M and Desplan, C}, journal = {Science}, year = {2019}, title = {Coordination between stochastic and deterministic specification in the {Drosophila} visual system}, volume = {366}, } @article{bib9, author = {Dacke, M and El Jundi, B}, journal = {Current Biology}, year = {2018}, title = {The {Dung} {Beetle} {Compass}}, volume = {28}, } @article{bib10, author = {Davis, FP and Nern, A and Picard, S and Reiser, MB and Rubin, GM and Eddy, SR and Henry, GL}, journal = {eLife}, year = {2020}, title = {A genetic, genomic, and computational resource for exploring neural circuit function}, volume = {9}, } @article{bib11, author = {Dionne, H and Hibbard, KL and Cavallaro, A and Kao, JC and Rubin, GM}, journal = {Genetics}, year = {2018}, pages = {31--35}, title = {Genetic {Reagents} for {Making} {Split}-{GAL4} {Lines} in {Drosophila}}, volume = {209}, } @article{bib12, author = {Dorkenwald, S and McKellar, C and Macrina, T and Kemnitz, N and Lee, K and Lu, R and Wu, J and Popovych, S and Mitchell, E and Nehoran, B and Jia, Z and Bae, JA and Mu, S}, journal = {bioRxiv}, year = {2020}, title = {FlyWire: Online {Community} for {Whole}-{Brain} {Connectomics}}, } @article{bib13, author = {El Jundi, B and Homberg, U}, journal = {Journal of Insect Physiology}, year = {2010}, pages = {971--979}, title = {Evidence for the possible existence of a second polarization-vision pathway in the locust brain}, volume = {56}, } @article{bib14, author = {el Jundi, B and Pfeiffer, K and Homberg, U}, journal = {PLOS ONE}, year = {2011}, title = {A distinct layer of the medulla integrates sky compass signals in the brain of an insect}, volume = {6}, } @article{bib15, author = {Feiler, R and Bjornson, R and Kirschfeld, K and Mismer, D and Rubin, GM and Smith, DP and Socolich, M and Zuker, CS}, journal = {The Journal of Neuroscience}, year = {1992}, pages = {3862--3868}, title = {Ectopic expression of ultraviolet-rhodopsins in the blue photoreceptor cells of {Drosophila}: visual physiology and photochemistry of transgenic animals}, volume = {12}, } @article{bib16, author = {Fischbach, KF and Lyly-H{\" u}nerberg, I}, journal = {Cell and Tissue Research}, year = {1983}, pages = {551--563}, title = {Genetic dissection of the anterior optic tract of {Drosophila} melanogaster}, volume = {231}, } @article{bib17, author = {Fischbach, KF and Dittrich, APM}, journal = {Cell and Tissue Research}, year = {1989}, pages = {441--475}, title = {The optic lobe of {Drosophila} melanogaster. {I}. {A} {Golgi} analysis of wild-type structure}, volume = {258}, } @article{bib18, author = {Fortini, ME and Rubin, GM}, journal = {Genes & Development}, year = {1990}, pages = {444--463}, title = {Analysis of cis-acting requirements of the {Rh3} and {Rh4} genes reveals a bipartite organization to rhodopsin promoters in {Drosophila} melanogaster}, volume = {4}, } @article{bib19, author = {Fortini, ME and Rubin, GM}, journal = {Cell and Tissue Research}, year = {1991}, pages = {185--191}, title = {The optic lobe projection pattern of polarization-sensitive photoreceptor cells in {Drosophila} melanogaster}, volume = {265}, } @article{bib20, author = {Fujita, SC and Zipursky, SL and Benzer, S and Ferr{\' u}s, A and Shotwell, SL}, journal = {PNAS}, year = {1982}, pages = {7929--7933}, title = {Monoclonal antibodies against the {Drosophila} nervous system}, volume = {79}, } @article{bib21, author = {Gao, S and Takemura, SY and Ting, CY and Huang, S and Lu, Z and Luan, H and Rister, J and Thum, AS and Yang, M and Hong, ST and Wang, JW and Odenwald, WF and White, BH and Meinertzhagen, IA and Lee, CH}, journal = {Neuron}, year = {2008}, pages = {328--342}, title = {The neural substrate of spectral preference in {Drosophila}}, volume = {60}, } @article{bib22, author = {Gkanias, E and Risse, B and Mangan, M and Webb, B}, journal = {PLOS Computational Biology}, year = {2019}, title = {From skylight input to behavioural output: A computational model of the insect polarised light compass}, volume = {15}, } @article{bib23, author = {Hardcastle, BJ and Omoto, JJ and Kandimalla, P and Nguyen, B-CM and Kele{\c s}, MF and Boyd, NK and Hartenstein, V and Frye, MA}, journal = {eLife}, year = {2021}, title = {A visual pathway for skylight polarization processing in {Drosophila}}, volume = {10}, } @article{bib24, author = {Heath, SL and Christenson, MP and Oriol, E and Saavedra-Weisenhaus, M and Kohn, JR and Behnia, R}, journal = {Current Biology}, year = {2020}, pages = {264--275}, title = {Circuit {Mechanisms} {Underlying} {Chromatic} {Encoding} in {Drosophila} {Photoreceptors}}, volume = {30}, } @article{bib25, author = {Heinze, S}, journal = {Current Opinion in Insect Science}, year = {2017}, pages = {58--67}, title = {Unraveling the neural basis of insect navigation}, volume = {24}, } @article{bib26, author = {Heisenberg, M and Buchner, E}, journal = {Journal of Comparative Physiology? A}, year = {1977}, pages = {127--162}, title = {The role of retinula cell types in visual behavior of {Drosophila} melanogaster}, volume = {117}, } @article{bib27, author = {Hempel de Ibarra, N and Vorobyev, M and Menzel, R}, journal = {Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology}, year = {2014}, pages = {411--433}, title = {Mechanisms, functions and ecology of colour vision in the honeybee}, volume = {200}, } @article{bib28, author = {Hilbrant, M and Almudi, I and Leite, DJ and Kuncheria, L and Posnien, N and Nunes, MDS and McGregor, AP}, journal = {BMC Evolutionary Biology}, year = {2014}, title = {Sexual dimorphism and natural variation within and among species in the {Drosophila} retinal mosaic}, volume = {14}, } @article{bib29, author = {Homberg, U}, journal = {Frontiers in Behavioral Neuroscience}, year = {2015}, title = {Sky {Compass} {Orientation} in {Desert} {Locusts}-{Evidence} from {Field} and {Laboratory} {Studies}}, volume = {9}, } @article{bib30, author = {Huber, A and Schulz, S and Bentrop, J and Groell, C and Wolfrum, U and Paulsen, R}, journal = {FEBS Letters}, year = {1997}, pages = {6--10}, title = {Molecular cloning of {Drosophila} {Rh6} rhodopsin: the visual pigment of a subset of {R8} photoreceptor cells}, volume = {406}, } @article{bib31, author = {Hulse, BK and Haberkern, H and Franconville, R and Turner-Evans, DB and Takemura, SY and Wolff, T and Noorman, M and Dreher, M and Dan, C and Parekh, R and Hermundstad, AM and Rubin, GM and Jayaraman, V}, journal = {eLife}, year = {2021}, title = {A connectome of the {Drosophila} central complex reveals network motifs suitable for flexible navigation and context-dependent action selection}, volume = {10}, } @article{bib32, author = {Jagadish, S and Barnea, G and Clandinin, TR and Axel, R}, journal = {Neuron}, year = {2014}, pages = {630--644}, title = {Identifying functional connections of the inner photoreceptors in {Drosophila} using {Tango}-{Trace}}, volume = {83}, } @article{bib33, author = {Jenett, A and Rubin, GM and Ngo, T-TB and Shepherd, D and Murphy, C and Dionne, H and Pfeiffer, BD and Cavallaro, A and Hall, D and Jeter, J and Iyer, N and Fetter, D and Hausenfluck, JH and Peng, H and Trautman, ET and Svirskas, RR and Myers, EW and Iwinski, ZR and Aso, Y and DePasquale, GM and Enos, A and Hulamm, P and Lam, SCB and Li, H-H and Laverty, TR and Long, F and Qu, L and Murphy, SD and Rokicki, K and Safford, T and Shaw, K and Simpson, JH and Sowell, A and Tae, S and Yu, Y and Zugates, CT}, journal = {Cell Reports}, year = {2012}, pages = {991--1001}, title = {A {GAL4}-driver line resource for {Drosophila} neurobiology}, volume = {2}, } @article{bib34, author = {Karuppudurai, T and Lin, TY and Ting, CY and Pursley, R and Melnattur, KV and Diao, F and White, BH and Macpherson, LJ and Gallio, M and Pohida, T and Lee, CH}, journal = {Neuron}, year = {2014}, pages = {603--615}, title = {A hard-wired glutamatergic circuit pools and relays {UV} signals to mediate spectral preference in {Drosophila}}, volume = {81}, } @article{bib35, author = {Kawase, T}, year = {2021}, title = {VVD\textunderscore{}{Viewer}}, howpublished = {https://github.com/takashi310/VVD\textunderscore{}Viewer}, } @article{bib36, author = {Kind, E and Belu{\v s}i{\v c}, G and Wernet, MF}, year = {2020}, publisher = {Elsevier}, title = {Retinal {Mosaics} {Across} {Fly} {Species}: Variations on a {Theme}}, } @article{bib37, author = {Klapoetke, NC and Murata, Y and Kim, SS and Pulver, SR and Birdsey-Benson, A and Cho, YK and Morimoto, TK and Chuong, AS and Carpenter, EJ and Tian, Z and Wang, J and Xie, Y and Yan, Z and Zhang, Y and Chow, BY and Surek, B and Melkonian, M and Jayaraman, V and Constantine-Paton, M and Wong, GKS and Boyden, ES}, journal = {Nature Methods}, year = {2014}, pages = {338--346}, title = {Independent optical excitation of distinct neural populations}, volume = {11}, } @article{bib38, author = {Konstantinides, N and Kapuralin, K and Fadil, C and Barboza, L and Satija, R and Desplan, C}, journal = {Cell}, year = {2018}, pages = {622--635}, title = {Phenotypic {Convergence}: Distinct {Transcription} {Factors} {Regulate} {Common} {Terminal} {Features}}, volume = {174}, } @article{bib39, author = {Kurmangaliyev, YZ and Yoo, J and Valdes-Aleman, J and Sanfilippo, P and Zipursky, SL}, journal = {Neuron}, year = {2020}, pages = {1045--1057}, title = {Transcriptional {Programs} of {Circuit} {Assembly} in the {Drosophila} {Visual} {System}}, volume = {108}, } @article{bib40, author = {Kvon, EZ and Kazmar, T and Stampfel, G and Y{\' a}{\~ n}ez-Cuna, JO and Pagani, M and Schernhuber, K and Dickson, BJ and Stark, A}, journal = {Nature}, year = {2014}, pages = {91--95}, title = {Genome-scale functional characterization of {Drosophila} developmental enhancers in vivo}, volume = {512}, } @article{bib41, author = {Labhart, T}, journal = {Nature}, year = {1988}, pages = {435--437}, title = {Polarization-opponent interneurons in the insect visual system}, volume = {331}, } @article{bib42, author = {Lazopulo, S and Lazopulo, A and Baker, JD and Syed, S}, journal = {Nature}, year = {2019}, pages = {108--111}, title = {Daytime colour preference in {Drosophila} depends on the circadian clock and {TRP} channels}, volume = {574}, } @article{bib43, author = {Li, F and Lindsey, JW and Marin, EC and Otto, N and Dreher, M and Dempsey, G and Stark, I and Bates, AS and Pleijzier, MW and Schlegel, P and Nern, A and Takemura, S-Y and Eckstein, N and Yang, T and Francis, A and Braun, A and Parekh, R and Costa, M and Scheffer, LK and Aso, Y and Jefferis, GS and Abbott, LF and Litwin-Kumar, A and Waddell, S and Rubin, GM}, journal = {eLife}, year = {2020}, title = {The connectome of the adult {Drosophila} mushroom body provides insights into function}, volume = {9}, } @article{bib44, author = {Li, Y and Chen, PJ and Lin, TY and Ting, CY and Muthuirulan, P and Pursley, R and Ili{\' c}, M and Pirih, P and Drews, MS and Menon, KP and Zinn, KG and Pohida, T and Borst, A and Lee, CH}, journal = {Current Biology}, year = {2021}, pages = {3040--3052}, title = {Neural mechanism of spatio-chromatic opponency in the {Drosophila} amacrine neurons}, volume = {31}, } @article{bib45, author = {Lin, TY and Luo, J and Shinomiya, K and Ting, CY and Lu, Z and Meinertzhagen, IA and Lee, CH}, journal = {The Journal of Comparative Neurology}, year = {2016}, pages = {213--227}, title = {Mapping chromatic pathways in the {Drosophila} visual system}, volume = {524}, } @article{bib46, author = {Longden, KD}, journal = {Current Biology}, year = {2016}, title = {Central {Brain} {Circuitry} for {Color}-{Vision}-{Modulated} {Behaviors}}, volume = {26}, } @article{bib47, author = {Luo, J and Ting, CY and Li, Y and McQueen, P and Lin, TY and Hsu, CP and Lee, CH}, journal = {eLife}, year = {2020}, title = {Antagonistic regulation by insulin-like peptide and activin ensures the elaboration of appropriate dendritic field sizes of amacrine neurons}, volume = {9}, } @article{bib48, author = {Mathejczyk, T.F and Wernet, MF}, journal = {Scientific Reports}, year = {2019}, title = {Heading choices of flying {Drosophila} under changing angles of polarized light}, volume = {9}, } @article{bib49, author = {Mathejczyk, TF and Wernet, MF}, journal = {Journal of Neuroscience Methods}, year = {2020}, title = {Modular assays for the quantitative study of visually guided navigation in both flying and walking flies}, volume = {340}, } @article{bib50, author = {Mauss, AS and Vlasits, A and Borst, A and Feller, M}, journal = {Annual Review of Neuroscience}, year = {2017}, pages = {211--230}, title = {Visual {Circuits} for {Direction} {Selectivity}}, volume = {40}, } @article{bib51, author = {Mazzoni, EO and Celik, A and Wernet, MF and Vasiliauskas, D and Johnston, RJ and Cook, TA and Pichaud, F and Desplan, C}, journal = {PLOS Biology}, year = {2008}, title = {Iroquois complex genes induce co-expression of rhodopsins in {Drosophila}}, volume = {6}, } @article{bib52, author = {Meinertzhagen, IA and O\textquoteright{}Neil, SD}, journal = {The Journal of Comparative Neurology}, year = {1991}, pages = {232--263}, title = {Synaptic organization of columnar elements in the lamina of the wild type in {Drosophila} melanogaster}, volume = {305}, } @article{bib53, author = {Meinertzhagen, IA and Takemura, S and Lu, Z and Huang, S and Gao, S and Ting, CY and Lee, CH}, journal = {Journal of Neurogenetics}, year = {2009}, pages = {68--77}, title = {From form to function: the ways to know a neuron}, volume = {23}, } @article{bib54, author = {Meissner, GW and Nern, A and Singer, RH and Wong, AM and Malkesman, O and Long, X}, journal = {Genetics}, year = {2019}, pages = {473--482}, title = {Mapping {Neurotransmitter} {Identity} in the {Whole}-{Mount} {Drosophila} {Brain} {Using} {Multiplex} {High}-{Throughput} {Fluorescence} in {Situ} {Hybridization}}, volume = {211}, } @article{bib55, author = {Melnattur, KV and Pursley, R and Lin, TY and Ting, CY and Smith, PD and Pohida, T and Lee, CH}, journal = {Journal of Neurogenetics}, year = {2014}, pages = {374--388}, title = {Multiple redundant medulla projection neurons mediate color vision in {Drosophila}}, volume = {28}, } @article{bib56, author = {Menon, KP and Kulkarni, V and Takemura, SY and Anaya, M and Zinn, K}, journal = {eLife}, year = {2019}, title = {Interactions between {Dpr11} and {DIP}-\gamma{} control selection of amacrine neurons in {Drosophila} color vision circuits}, volume = {8}, } @article{bib57, author = {Mollereau, B and Wernet, MF and Beaufils, P and Killian, D and Pichaud, F and K{\" u}hnlein, R and Desplan, C}, journal = {Mechanisms of Development}, year = {2000}, pages = {151--160}, title = {A green fluorescent protein enhancer trap screen in {Drosophila} photoreceptor cells}, volume = {93}, } @article{bib58, author = {Morante, J and Desplan, C}, journal = {Current Biology}, year = {2008}, pages = {553--565}, title = {The color-vision circuit in the medulla of {Drosophila}}, volume = {18}, } @article{bib59, author = {Mota, T and Gronenberg, W and Giurfa, M and Sandoz, JC}, journal = {The Journal of Neuroscience}, year = {2013}, pages = {4--16}, title = {Chromatic processing in the anterior optic tubercle of the honey bee brain}, volume = {33}, } @article{bib60, author = {Nern, A and Pfeiffer, BD and Rubin, GM}, journal = {PNAS}, year = {2015}, title = {Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system}, volume = {112}, } @article{bib61, author = {{Neuron Analysis & Visualization}}, year = {2021}, title = {pymaid}, howpublished = {https://github.com/navis-org/pymaid}, } @article{bib62, author = {{Neuron Analysis & Visualization}}, year = {2021}, title = {fafbseg-py}, howpublished = {https://github.com/navis-org/fafbseg-py}, } @article{bib63, author = {Nilsson, DE and Warrant, EJ}, journal = {Current Biology}, year = {1999}, title = {Visual discrimination: Seeing the third quality of light}, volume = {9}, } @article{bib64, author = {Omoto, JJ and Kele{\c s}, MF and Nguyen, B-CM and Bolanos, C and Lovick, JK and Frye, MA and Hartenstein, V}, journal = {Current Biology}, year = {2017}, pages = {1098--1110}, title = {Visual {Input} to the {Drosophila} {Central} {Complex} by {Developmentally} and {Functionally} {Distinct} {Neuronal} {Populations}}, volume = {27}, } @article{bib65, author = {Otsuna, H and Ito, K}, journal = {The Journal of Comparative Neurology}, year = {2006}, pages = {928--958}, title = {Systematic analysis of the visual projection neurons of {Drosophila} melanogaster. {I}. {Lobula}-specific pathways}, volume = {497}, } @article{bib66, author = {Otsuna, H and Shinomiya, K and Ito, K}, journal = {Frontiers in Neural Circuits}, year = {2014}, title = {Parallel neural pathways in higher visual centers of the {Drosophila} brain that mediate wavelength-specific behavior}, volume = {8}, } @article{bib67, author = {{\" O}zel, MN and Simon, F and Jafari, S and Holguera, I and Chen, YC and Benhra, N and El-Danaf, RN and Kapuralin, K and Malin, JA and Konstantinides, N and Desplan, C}, journal = {Nature}, year = {2021}, pages = {88--95}, title = {Neuronal diversity and convergence in a visual system developmental atlas}, volume = {589}, } @article{bib68, author = {Pagni, M and Haikala, V and Oberhauser, V and Meyer, PB and Reiff, DF and Schnaitmann, C}, journal = {Current Biology}, year = {2021}, pages = {1687--1698}, title = {Interaction of ``chromatic'' and ``achromatic'' circuits in {Drosophila} color opponent processing}, volume = {31}, } @article{bib69, author = {Panser, K and Tirian, L and Schulze, F and Villalba, S and Jefferis, GSXE and B{\" u}hler, K and Straw, AD}, journal = {Current Biology}, year = {2016}, pages = {1943--1954}, title = {Automatic {Segmentation} of {Drosophila} {Neural} {Compartments} {Using} {GAL4} {Expression} {Data} {Reveals} {Novel} {Visual} {Pathways}}, volume = {26}, } @article{bib70, author = {Pantazis, A and Segaran, A and Liu, CH and Nikolaev, A and Rister, J and Thum, AS and Roeder, T and Semenov, E and Juusola, M and Hardie, RC}, journal = {The Journal of Neuroscience}, year = {2008}, pages = {7250--7259}, title = {Distinct roles for two histamine receptors ({hclA} and {hclB}) at the {Drosophila} photoreceptor synapse}, volume = {28}, } @article{bib71, author = {Papatsenko, D and Sheng, G and Desplan, C}, journal = {Development}, year = {1997}, pages = {1665--1673}, title = {A new rhodopsin in {R8} photoreceptors of {Drosophila}: evidence for coordinate expression with {Rh3} in {R7} cells}, volume = {124}, } @article{bib72, author = {Pfeiffer, BD and Jenett, A and Hammonds, AS and Ngo, TTB and Misra, S and Murphy, C and Scully, A and Carlson, JW and Wan, KH and Laverty, TR and Mungall, C and Svirskas, R and Kadonaga, JT and Doe, CQ and Eisen, MB and Celniker, SE and Rubin, GM}, journal = {PNAS}, year = {2008}, pages = {9715--9720}, title = {Tools for neuroanatomy and neurogenetics in {Drosophila}}, volume = {105}, } @article{bib73, author = {Pfeiffer, K and Kinoshita, M}, journal = {The Journal of Comparative Neurology}, year = {2012}, pages = {212--229}, title = {Segregation of visual inputs from different regions of the compound eye in two parallel pathways through the anterior optic tubercle of the bumblebee ({Bombus} ignitus)}, volume = {520}, } @article{bib74, author = {Pichaud, F and Desplan, C}, journal = {Development}, year = {2001}, pages = {815--826}, title = {A new visualization approach for identifying mutations that affect differentiation and organization of the {Drosophila} ommatidia}, volume = {128}, } @article{bib75, author = {Pollack, I and Hofbauer, A}, journal = {Cell and Tissue Research}, year = {1991}, pages = {391--398}, title = {Histamine-like immunoreactivity in the visual system and brain of {Drosophila} melanogaster}, volume = {266}, } @article{bib76, author = {{Reiser Lab}}, year = {2022}, title = {FAFB-photoreceptor-connectivity}, howpublished = {https://archive.softwareheritage.org/swh:1:dir:32b23ce32ea4018d238ae2e1b4a5dc779afa4e04;origin=https://github.com/reiserlab/FAFB-photoreceptor-connectivity;visit=swh:1:snp:246e152f8cdd14cddfa052333de5c97e3488b59e;anchor=swh:1:rev:f8e6732868c4afa184a379abfbc5042eef920321}, } @article{bib77, author = {Rister, J and Desplan, C}, journal = {Developmental Neurobiology}, year = {2011}, pages = {1212--1226}, title = {The retinal mosaics of opsin expression in invertebrates and vertebrates}, volume = {71}, } @article{bib78, author = {Rivera-Alba, M and Vitaladevuni, SN and Mishchenko, Y and Mischenko, Y and Lu, Z and Takemura, S-Y and Scheffer, L and Meinertzhagen, IA and Chklovskii, DB and de Polavieja, GG}, journal = {Current Biology}, year = {2011}, pages = {2000--2005}, title = {Wiring economy and volume exclusion determine neuronal placement in the {Drosophila} brain}, volume = {21}, } @article{bib79, author = {Saalfeld, S and Cardona, A and Hartenstein, V and Tomancak, P}, journal = {Bioinformatics}, year = {2009}, pages = {1984--1986}, title = {CATMAID: collaborative annotation toolkit for massive amounts of image data}, volume = {25}, } @article{bib80, author = {Salcedo, E and Huber, A and Henrich, S and Chadwell, LV and Chou, WH and Paulsen, R and Britt, SG}, journal = {The Journal of Neuroscience}, year = {1999}, pages = {10716--10726}, title = {Blue- and green-absorbing visual pigments of {Drosophila}: ectopic expression and physiological characterization of the {R8} photoreceptor cell-specific {Rh5} and {Rh6} rhodopsins}, volume = {19}, } @article{bib81, author = {Sancer, G and Kind, E and Plazaola-Sasieta, H and Balke, J and Pham, T and Hasan, A and M{\" u}nch, LO and Courgeon, M and Mathejczyk, TF and Wernet, MF}, journal = {Current Biology}, year = {2019}, pages = {2812--2825}, title = {Modality-{Specific} {Circuits} for {Skylight} {Orientation} in the {Fly} {Visual} {System}}, volume = {29}, } @article{bib82, author = {Sancer, G and Kind, E and Uhlhorn, J and Volkmann, J and Hammacher, J and Pham, T and Plazaola-Sasieta, H and Wernet, MF}, journal = {Journal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology}, year = {2020}, pages = {233--246}, title = {Cellular and synaptic adaptations of neural circuits processing skylight polarization in the fly}, volume = {206}, } @article{bib83, author = {Sancer, G and Wernet, MF}, journal = {Arthropod Structure & Development}, year = {2021}, title = {The development and function of neuronal subtypes processing color and skylight polarization in the optic lobes of {Drosophila} melanogaster}, volume = {61}, } @article{bib84, author = {Scheffer, LK and Xu, CS and Januszewski, M and Lu, Z and Takemura, SY and Hayworth, KJ and Huang, GB and Shinomiya, K and Maitlin-Shepard, J and Berg, S and Clements, J and Hubbard, PM and Katz, WT and Umayam, L and Zhao, T and Ackerman, D and Blakely, T and Bogovic, J and Dolafi, T and Kainmueller, D and Kawase, T and Khairy, KA and Leavitt, L and Li, PH and Lindsey, L and Neubarth, N and Olbris, DJ and Otsuna, H and Trautman, ET and Ito, M and Bates, AS and Goldammer, J and Wolff, T and Svirskas, R and Schlegel, P and Neace, E and Knecht, CJ and Alvarado, CX and Bailey, DA and Ballinger, S and Borycz, JA and Canino, BS and Cheatham, N and Cook, M and Dreher, M and Duclos, O and Eubanks, B and Fairbanks, K and Finley, S and Forknall, N and Francis, A and Hopkins, GP and Joyce, EM and Kim, S and Kirk, NA and Kovalyak, J and Lauchie, SA and Lohff, A and Maldonado, C and Manley, EA and McLin, S and Mooney, C and Ndama, M and Ogundeyi, O and Okeoma, N and Ordish, C and Padilla, N and Patrick, CM and Paterson, T and Phillips, EE and Phillips, EM and Rampally, N and Ribeiro, C and Robertson, MK and Rymer, JT and Ryan, SM and Sammons, M and Scott, AK and Scott, AL and Shinomiya, A and Smith, C and Smith, K and Smith, NL and Sobeski, MA and Suleiman, A and Swift, J and Takemura, S and Talebi, I and Tarnogorska, D and Tenshaw, E and Tokhi, T and Walsh, JJ and Yang, T and Horne, JA and Li, F and Parekh, R and Rivlin, PK and Jayaraman, V and Costa, M and Jefferis, GS and Ito, K and Saalfeld, S and George, R and Meinertzhagen, IA and Rubin, GM and Hess, HF and Jain, V and Plaza, SM}, journal = {eLife}, year = {2020}, title = {A connectome and analysis of the adult {Drosophila} central brain}, volume = {9}, } @article{bib85, author = {Schnaitmann, C and Garbers, C and Wachtler, T and Tanimoto, H}, journal = {Current Biology}, year = {2013}, pages = {2375--2382}, title = {Color discrimination with broadband photoreceptors}, volume = {23}, } @article{bib86, author = {Schnaitmann, C and Haikala, V and Abraham, E and Oberhauser, V and Thestrup, T and Griesbeck, O and Reiff, DF}, journal = {Cell}, year = {2018}, pages = {318--330}, title = {Color {Processing} in the {Early} {Visual} {System} of {Drosophila}}, volume = {172}, } @article{bib87, author = {Schneider-Mizell, CM and Gerhard, S and Longair, M and Kazimiers, T and Li, F and Zwart, MF and Champion, A and Midgley, FM and Fetter, RD and Saalfeld, S and Cardona, A}, journal = {eLife}, year = {2016}, title = {Quantitative neuroanatomy for connectomics in {Drosophila}}, volume = {5}, } @article{bib88, author = {Sharkey, CR and Blanco, J and Leibowitz, MM and Pinto-Benito, D and Wardill, TJ}, journal = {Scientific Reports}, year = {2020}, title = {The spectral sensitivity of {Drosophila} photoreceptors}, volume = {10}, } @article{bib89, author = {Shinomiya, K and Karuppudurai, T and Lin, TY and Lu, Z and Lee, CH and Meinertzhagen, IA}, journal = {Current Biology}, year = {2014}, pages = {1062--1070}, title = {Candidate neural substrates for off-edge motion detection in {Drosophila}}, volume = {24}, } @article{bib90, author = {Silies, M and Gohl, DM and Fisher, YE and Freifeld, L and Clark, DA and Clandinin, TR}, journal = {Neuron}, year = {2013}, pages = {111--127}, title = {Modular use of peripheral input channels tunes motion-detecting circuitry}, volume = {79}, } @article{bib91, author = {Strother, JA and Wu, ST and Wong, AM and Nern, A and Rogers, EM and Le, JQ and Rubin, GM and Reiser, MB}, journal = {Neuron}, year = {2017}, pages = {168--182}, title = {The emergence of directional selectivity in the visual motion pathway of {Drosophila}}, volume = {94}, } @article{bib92, author = {Tahayato, A and Sonneville, R and Pichaud, F and Wernet, MF and Papatsenko, D and Beaufils, P and Cook, T and Desplan, C}, journal = {Developmental Cell}, year = {2003}, pages = {391--402}, title = {Otd/{Crx}, a dual regulator for the specification of ommatidia subtypes in the {Drosophila} retina}, volume = {5}, } @article{bib93, author = {Tai, CY and Chin, AL and Chiang, AS}, journal = {The Journal of Comparative Neurology}, year = {2021}, pages = {1988--2013}, title = {Comprehensive map of visual projection neurons for processing ultraviolet information in the {Drosophila} brain}, volume = {529}, } @article{bib94, author = {Takemura, SY and Lu, ZY and Meinertzhagen, IA}, journal = {The Journal of Comparative Neurology}, year = {2008}, pages = {493--513}, title = {Synaptic circuits of the {Drosophila} optic lobe: the input terminals to the medulla}, volume = {509}, } @article{bib95, author = {Takemura, S and Bharioke, A and Lu, Z and Nern, A and Vitaladevuni, S and Rivlin, PK and Katz, WT and Olbris, DJ and Plaza, SM and Winston, P and Zhao, T and Horne, JA and Fetter, RD and Takemura, S and Blazek, K and Chang, L-A and Ogundeyi, O and Saunders, MA and Shapiro, V and Sigmund, C and Rubin, GM and Scheffer, LK and Meinertzhagen, IA and Chklovskii, DB}, journal = {Nature}, year = {2013}, pages = {175--181}, title = {A visual motion detection circuit suggested by {Drosophila} connectomics}, volume = {500}, } @article{bib96, author = {Takemura, S and Xu, CS and Lu, Z and Rivlin, PK and Parag, T and Olbris, DJ and Plaza, S and Zhao, T and Katz, WT and Umayam, L and Weaver, C and Hess, HF and Horne, JA and Nunez-Iglesias, J and Aniceto, R and Chang, LA and Lauchie, S and Nasca, A and Ogundeyi, O and Sigmund, C and Takemura, S and Tran, J and Langille, C and Le Lacheur, K and McLin, S and Shinomiya, A and Chklovskii, DB and Meinertzhagen, IA and Scheffer, LK}, journal = {PNAS}, year = {2015}, pages = {13711--13716}, title = {Synaptic circuits and their variations within different columns in the visual system of {Drosophila}}, volume = {112}, } @article{bib97, author = {Takemura, SY and Nern, A and Chklovskii, DB and Scheffer, LK and Rubin, GM and Meinertzhagen, IA}, journal = {eLife}, year = {2017}, title = {The comprehensive connectome of a neural substrate for ``{ON}'' motion detection in {Drosophila}}, volume = {6}, } @article{bib98, author = {Timaeus, L and Geid, L and Sancer, G and Wernet, MF and Hummel, T}, journal = {IScience}, year = {2020}, title = {Parallel {Visual} {Pathways} with {Topographic} versus {Nontopographic} {Organization} {Connect} the {Drosophila} {Eyes} to the {Central} {Brain}}, volume = {23}, } @article{bib99, author = {Tirian, L and Dickson, BJ}, journal = {bioRxiv}, year = {2017}, title = {The {VT} {GAL4}, {LexA}, and {Split}-{GAL4} {Driver} {Line} {Collections} for {Targeted} {Expression} in the {Drosophila} {Nervous} {System}}, } @article{bib100, author = {Tuthill, JC and Nern, A and Holtz, SL and Rubin, GM and Reiser, MB}, journal = {Neuron}, year = {2013}, pages = {128--140}, title = {Contributions of the 12 neuron classes in the fly lamina to motion vision}, volume = {79}, } @article{bib101, author = {Uhlhorn, J and Wernet, MF}, journal = {Current Biology}, year = {2020}, title = {Colour {Vision}: Self-{Centered} {Fly} {Photoreceptors} {Communicate} over {Distances}}, volume = {30}, } @article{bib102, author = {Vogt, K and Schnaitmann, C and Dylla, KV and Knapek, S and Aso, Y and Rubin, GM and Tanimoto, H}, journal = {eLife}, year = {2014}, title = {Shared mushroom body circuits underlie visual and olfactory memories in {Drosophila}}, volume = {3}, } @article{bib103, author = {Wada, S}, journal = {Z Morphol Tiere}, year = {1974}, pages = {87--125}, title = {Special {Marginal} {Ommatidia} of {Flies} ({Diptera}-{Brachycera}) - {Architecture} and {Distribution} in {Compound} {Eyes}}, volume = {77}, } @article{bib104, author = {Wada, S}, journal = {International Journal of Insect Morphology and Embryology}, year = {1974}, pages = {397--424}, title = {Spezielle randzonale ommatidien von {Calliphora} {Erythrocephala} meig. (diptera calliphoridae): Architektur der zentralen rhabdomeren-kolumne und topographie im komplexauge}, volume = {3}, } @article{bib105, author = {Wagh, DA and Rasse, TM and Asan, E and Hofbauer, A and Schwenkert, I and D{\" u}rrbeck, H and Buchner, S and Dabauvalle, MC and Schmidt, M and Qin, G and Wichmann, C and Kittel, R and Sigrist, SJ and Buchner, E}, journal = {Neuron}, year = {2006}, pages = {833--844}, title = {Bruchpilot, a protein with homology to {ELKS}/{CAST}, is required for structural integrity and function of synaptic active zones in {Drosophila}}, volume = {49}, } @article{bib106, author = {Wardill, TJ and List, O and Li, X and Dongre, S and McCulloch, M and Ting, CY and O\textquoteright{}Kane, CJ and Tang, S and Lee, CH and Hardie, RC and Juusola, M}, journal = {Science}, year = {2012}, pages = {925--931}, title = {Multiple spectral inputs improve motion discrimination in the {Drosophila} visual system}, volume = {336}, } @article{bib107, author = {Warren, TL and Weir, PT and Dickinson, MH}, journal = {The Journal of Experimental Biology}, year = {2018}, title = {Flying {Drosophila} melanogaster maintain arbitrary but stable headings relative to the angle of polarized light}, volume = {221}, } @article{bib108, author = {Wehner, R and M{\" u}ller, M}, journal = {Nature}, year = {1985}, pages = {228--229}, title = {Does interocular transfer occur in visual navigation by ants?}, volume = {315}, } @article{bib109, author = {Weir, PT and Dickinson, MH}, journal = {Current Biology}, year = {2012}, pages = {21--27}, title = {Flying {Drosophila} orient to sky polarization}, volume = {22}, } @article{bib110, author = {Weir, PT and Henze, MJ and Bleul, C and Baumann-Klausener, F and Labhart, T and Dickinson, MH}, journal = {The Journal of Neuroscience}, year = {2016}, pages = {5397--5404}, title = {Anatomical {Reconstruction} and {Functional} {Imaging} {Reveal} an {Ordered} {Array} of {Skylight} {Polarization} {Detectors} in {Drosophila}}, volume = {36}, } @article{bib111, author = {Wernet, M.F and Labhart, T and Baumann, F and Mazzoni, EO and Pichaud, F and Desplan, C}, journal = {Cell}, year = {2003}, pages = {267--279}, title = {Homothorax switches function of {Drosophila} photoreceptors from color to polarized light sensors}, volume = {115}, } @article{bib112, author = {Wernet, MF and Velez, MM and Clark, DA and Baumann-Klausener, F and Brown, JR and Klovstad, M and Labhart, T and Clandinin, TR}, journal = {Current Biology}, year = {2012}, pages = {12--20}, title = {Genetic dissection reveals two separate retinal substrates for polarization vision in {Drosophila}}, volume = {22}, } @article{bib113, author = {Wernet, M.F and Huberman, AD and Desplan, C}, journal = {Genes & Development}, year = {2014}, pages = {2565--2584}, title = {So many pieces, one puzzle: cell type specification and visual circuitry in flies and mice}, volume = {28}, } @article{bib114, author = {Wernet, M.F and Perry, MW and Desplan, C}, journal = {Trends in Genetics}, year = {2015}, pages = {316--328}, title = {The evolutionary diversity of insect retinal mosaics: common design principles and emerging molecular logic}, volume = {31}, } @article{bib115, author = {Wu, M and Nern, A and Williamson, WR and Morimoto, MM and Reiser, MB and Card, GM and Rubin, GM}, journal = {eLife}, year = {2016}, title = {Visual projection neurons in the {Drosophila} lobula link feature detection to distinct behavioral programs}, volume = {5}, } @article{bib116, author = {Yamaguchi, S and Wolf, R and Desplan, C and Heisenberg, M}, journal = {PNAS}, year = {2008}, pages = {4910--4915}, title = {Motion vision is independent of color in {Drosophila}}, volume = {105}, } @article{bib117, author = {Zheng, Z and Lauritzen, JS and Perlman, E and Robinson, CG and Nichols, M and Milkie, D and Torrens, O and Price, J and Fisher, CB and Sharifi, N and Calle-Schuler, SA and Kmecova, L and Ali, IJ and Karsh, B and Trautman, ET and Bogovic, JA and Hanslovsky, P and Jefferis, GSXE and Kazhdan, M and Khairy, K and Saalfeld, S and Fetter, RD and Bock, DD}, journal = {Cell}, year = {2018}, pages = {730--743}, title = {A {Complete} {Electron} {Microscopy} {Volume} of the {Brain} of {Adult} {Drosophila} melanogaster}, volume = {174}, }