Stochastic logistic models reproduce experimental time series of microbial communities

Snapshot #26

nokome 4 months, 1 week ago Finished

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docker.io/stencila/executa-midi@sha256:5a4399ac82484258b48caa2c728bf7c4895658151df60deded7bee1d8a078a78

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Type Path Last modified Size Actions
Data 4 months, 1 week ago 168.7MiB
Experimental.ipynb 4 months, 1 week ago 280.9KiB
Figures eLife.ipynb 4 months, 1 week ago 322.3KiB
Fisher Mehta neutral model annotated.ipynb 4 months, 1 week ago 108.5KiB
Influence interactions SOI and sgLV.ipynb 4 months, 1 week ago 2.1MiB
Noise color fit comparison (linear vs spline).ipynb 4 months, 1 week ago 50.0KiB
README 4 months, 1 week ago 1.1KiB
Study noise no interaction.ipynb 4 months, 1 week ago 1.5MiB
Study noise with interaction.ipynb 4 months, 1 week ago 1.3MiB
Understand noise color.ipynb 4 months, 1 week ago 60.6KiB
Understanding Fisher Mehta Figure 2B.ipynb 4 months, 1 week ago 2.0MiB
Width distribution dx.ipynb 4 months, 1 week ago 184.7KiB
article.ipynb 4 months, 1 week ago 210.1KiB
article.xml 4 months, 1 week ago 135.8KiB
article.xml.media 4 months, 1 week ago 1.3MiB
brownian.py 4 months, 1 week ago 2.6KiB
elife_settings.py 4 months, 1 week ago 1.3KiB
generate_timeseries.py 4 months, 1 week ago 15.2KiB
index.html 4 months, 1 week ago 438.4KiB
index.html.media 4 months, 1 week ago 67.6KiB
make_colormap.py 4 months, 1 week ago 1.8KiB
neutral_covariance_test.py 4 months, 1 week ago 5.1KiB
neutrality_analysis.py 4 months, 1 week ago 4.0KiB
noise_analysis.py 4 months, 1 week ago 26.9KiB
noise_color_analysis.py 4 months, 1 week ago 2.7KiB
noise_parameters.py 4 months, 1 week ago 409.0B
noise_properties_plotting.py 4 months, 1 week ago 22.8KiB
results 4 months, 1 week ago 669.2MiB
smooth_spline.py 4 months, 1 week ago 4.6KiB
timeseries_plotting.py 4 months, 1 week ago 1.0KiB